ENCFF226BCZ

Library Details

Organism: Homo Sapiens
Biosample: Karpas-422 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR905KHW
Description: Part of ENCODE experiment ENCSR905KHW. The libraries contained in this experiment come from independent growths of cell line, Karpas-422. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362168.1 ENST00000362168.1_66_87_+ 66–87 2305.00 62.62 15.22 100.0 MIR210-201 miRNA Karpas-422 (Cell line)
ENST00000362177.3 ENST00000362177.3_43_64_+ 43–64 34055.00 95.86 224.80 97.1 MIR378A-201 miRNA Karpas-422 (Cell line)
ENST00000362181.3 ENST00000362181.3_6_27_+ 6–27 569.00 33.33 3.76 100.0 MIR361-201 miRNA Karpas-422 (Cell line)
ENST00000362195.3 ENST00000362195.3_48_66_+ 48–66 64.00 4.03 0.42 22.46 MIR101-2-201 miRNA Karpas-422 (Cell line)
ENST00000362195.3 ENST00000362195.3_49_70_+ 49–70 1263.00 79.43 8.34 85.11 MIR101-2-201 miRNA Karpas-422 (Cell line)
ENST00000362205.1 ENST00000362205.1_10_31_+ 10–31 5685.00 98.70 37.53 99.13 MIR26A1-201 miRNA Karpas-422 (Cell line)
ENST00000362207.3 ENST00000362207.3_15_35_+ 15–35 90.00 50.28 0.59 100.0 MIR129-2-201 miRNA Karpas-422 (Cell line)
ENST00000362212.1 ENST00000362212.1_61_83_+ 61–83 10.00 83.33 0.07 100.0 MIR342-201 miRNA Karpas-422 (Cell line)
ENST00000362215.3 ENST00000362215.3_6_27_+ 6–27 80.00 0.81 0.53 100.0 MIR148A-201 miRNA Karpas-422 (Cell line)
ENST00000362215.3 ENST00000362215.3_44_65_+ 44–65 9487.00 96.13 62.63 97.39 MIR148A-201 miRNA Karpas-422 (Cell line)
ENST00000362251.4 ENST00000362251.4_12_33_+ 12–33 4649.00 96.55 30.69 98.39 MIR26B-201 miRNA Karpas-422 (Cell line)
ENST00000362252.3 ENST00000362252.3_63_86_+ 63–86 937.00 75.63 6.19 82.34 MIR148B-201 miRNA Karpas-422 (Cell line)
ENST00000362280.3 ENST00000362280.3_5_26_+ 5–26 3635.00 96.80 24.00 99.4 MIRLET7G-201 miRNA Karpas-422 (Cell line)
ENST00000362283.1 ENST00000362283.1_6_25_+ 6–25 2067.00 5.46 13.64 70.52 MIR30D-201 miRNA Karpas-422 (Cell line)
ENST00000362283.1 ENST00000362283.1_6_21_+ 6–21 270.00 0.71 1.78 100.0 MIR30D-201 miRNA Karpas-422 (Cell line)
ENST00000362283.1 ENST00000362283.1_6_29_+ 6–29 34262.00 90.48 226.17 97.54 MIR30D-201 miRNA Karpas-422 (Cell line)
ENST00000362298.3 ENST00000362298.3_42_63_+ 42–63 61.00 28.77 0.40 100.0 MIR374A-201 miRNA Karpas-422 (Cell line)
ENST00000362400.1 ENST00000362400.1_5_95_+ 5–95 7524.00 1.88 49.67 98.97 RNA5S12-201 rRNA Karpas-422 (Cell line)
ENST00000362400.1 ENST00000362400.1_1_83_+ 1–83 10529.00 2.63 69.50 61.06 RNA5S12-201 rRNA Karpas-422 (Cell line)
ENST00000362400.1 ENST00000362400.1_1_49_+ 1–49 6424.00 1.60 42.41 70.07 RNA5S12-201 rRNA Karpas-422 (Cell line)
ENST00000362400.1 ENST00000362400.1_1_58_+ 1–58 2798.00 0.70 18.47 100.0 RNA5S12-201 rRNA Karpas-422 (Cell line)
ENST00000362400.1 ENST00000362400.1_26_95_+ 26–95 556.00 0.14 3.67 23.56 RNA5S12-201 rRNA Karpas-422 (Cell line)
ENST00000362400.1 ENST00000362400.1_14_32_+ 14–32 571.00 0.14 3.77 100.0 RNA5S12-201 rRNA Karpas-422 (Cell line)
ENST00000362400.1 ENST00000362400.1_15_95_+ 15–95 1578.25 0.39 10.42 55.16 RNA5S12-201 rRNA Karpas-422 (Cell line)
ENST00000362400.1 ENST00000362400.1_1_95_+ 1–95 32628.00 8.14 215.38 99.76 RNA5S12-201 rRNA Karpas-422 (Cell line)