ENCFF226BCZ

Library Details

Organism: Homo Sapiens
Biosample: Karpas-422 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR905KHW
Description: Part of ENCODE experiment ENCSR905KHW. The libraries contained in this experiment come from independent growths of cell line, Karpas-422. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000485101.5 ENST00000485101.5_365_408_+ 365–408 4600.00 0.32 30.37 57.65 EIF4A2-219 retained intron Karpas-422 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_434_+ 343–434 2.00 0.00 0.01 100.0 EIF4A2-219 retained intron Karpas-422 (Cell line)
ENST00000485101.5 ENST00000485101.5_362_405_+ 362–405 3858.00 0.27 25.47 61.45 EIF4A2-219 retained intron Karpas-422 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 2749.00 0.19 18.15 47.68 EIF4A2-219 retained intron Karpas-422 (Cell line)
ENST00000485101.5 ENST00000485101.5_348_405_+ 348–405 1867.00 0.13 12.32 48.93 EIF4A2-219 retained intron Karpas-422 (Cell line)
ENST00000485390.5 ENST00000485390.5_230_303_+ 230–303 26243.00 94.22 173.24 100.0 RPS8-207 protein coding CDS not defined Karpas-422 (Cell line)
ENST00000485706.5 ENST00000485706.5_456_485_+ 456–485 301.00 11.99 1.99 100.0 RPL7A-206 protein coding CDS not defined Karpas-422 (Cell line)
ENST00000485706.5 ENST00000485706.5_456_524_+ 456–524 248.00 9.88 1.64 100.0 RPL7A-206 protein coding CDS not defined Karpas-422 (Cell line)
ENST00000485706.5 ENST00000485706.5_486_524_+ 486–524 507.00 20.20 3.35 100.0 RPL7A-206 protein coding CDS not defined Karpas-422 (Cell line)
ENST00000485756.1 ENST00000485756.1_123_168_+ 123–168 1207.00 0.33 7.97 100.0 RPL21-209 retained intron Karpas-422 (Cell line)
ENST00000485756.1 ENST00000485756.1_138_189_+ 138–189 700.00 0.19 4.62 100.0 RPL21-209 retained intron Karpas-422 (Cell line)
ENST00000485756.1 ENST00000485756.1_122_192_+ 122–192 156182.00 43.03 1030.99 99.65 RPL21-209 retained intron Karpas-422 (Cell line)
ENST00000485756.1 ENST00000485756.1_123_189_+ 123–189 199051.00 54.84 1313.98 95.74 RPL21-209 retained intron Karpas-422 (Cell line)
ENST00000485756.1 ENST00000485756.1_173_189_+ 173–189 62.00 0.02 0.41 100.0 RPL21-209 retained intron Karpas-422 (Cell line)
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 2.00 0.00 0.01 100.0 RPL13A-212 retained intron Karpas-422 (Cell line)
ENST00000488946.1 ENST00000488946.1_1363_1444_+ 1363–1444 1383.00 0.77 9.13 100.0 RPL13A-212 retained intron Karpas-422 (Cell line)
ENST00000488946.1 ENST00000488946.1_804_886_+ 804–886 18605.00 10.32 122.82 92.76 RPL13A-212 retained intron Karpas-422 (Cell line)
ENST00000488946.1 ENST00000488946.1_1095_1159_+ 1095–1159 92.00 0.05 0.61 100.0 RPL13A-212 retained intron Karpas-422 (Cell line)
ENST00000488946.1 ENST00000488946.1_1364_1441_+ 1364–1441 241.00 0.13 1.59 25.75 RPL13A-212 retained intron Karpas-422 (Cell line)
ENST00000488946.1 ENST00000488946.1_155_235_+ 155–235 145787.00 80.83 962.37 99.4 RPL13A-212 retained intron Karpas-422 (Cell line)
ENST00000488946.1 ENST00000488946.1_844_886_+ 844–886 17.00 0.01 0.11 100.0 RPL13A-212 retained intron Karpas-422 (Cell line)
ENST00000488946.1 ENST00000488946.1_197_235_+ 197–235 257.00 0.14 1.70 100.0 RPL13A-212 retained intron Karpas-422 (Cell line)
ENST00000489392.1 ENST00000489392.1_116_191_+ 116–191 18581.00 58.37 122.66 66.57 RPL7A-207 protein coding CDS not defined Karpas-422 (Cell line)
ENST00000489392.1 ENST00000489392.1_151_191_+ 151–191 244.00 0.77 1.61 100.0 RPL7A-207 protein coding CDS not defined Karpas-422 (Cell line)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 193.00 0.61 1.27 100.0 RPL7A-207 protein coding CDS not defined Karpas-422 (Cell line)