ENCFF226BCZ

Library Details

Organism: Homo Sapiens
Biosample: Karpas-422 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR905KHW
Description: Part of ENCODE experiment ENCSR905KHW. The libraries contained in this experiment come from independent growths of cell line, Karpas-422. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000393354.7 ENST00000393354.7_8003_8016_+ 8003–8016 12197.00 69.30 80.51 80.48 B4GALNT2-202 protein coding Karpas-422 (Cell line)
ENST00000393354.7 ENST00000393354.7_7988_8016_+ 7988–8016 897.00 5.10 5.92 100.0 B4GALNT2-202 protein coding Karpas-422 (Cell line)
ENST00000396355.5 ENST00000396355.5_35_56_+ 35–56 653.00 88.36 4.31 100.0 NDE1-202 protein coding Karpas-422 (Cell line)
ENST00000401182.3 ENST00000401182.3_11_31_+ 11–31 1.00 20.00 0.01 100.0 MIR450B-201 miRNA Karpas-422 (Cell line)
ENST00000408139.1 ENST00000408139.1_5_91_+ 5–91 2894.00 60.42 19.10 100.0 SNORD111-201 snoRNA Karpas-422 (Cell line)
ENST00000408314.1 ENST00000408314.1_5_86_+ 5–86 4597.00 45.03 30.35 68.57 SNORD88A-201 snoRNA Karpas-422 (Cell line)
ENST00000408406.1 ENST00000408406.1_32_53_+ 32–53 328.00 91.36 2.17 100.0 MIR548K-201 miRNA Karpas-422 (Cell line)
ENST00000408479.1 ENST00000408479.1_72_91_+ 72–91 70.00 56.00 0.46 100.0 MIR320B2-201 miRNA Karpas-422 (Cell line)
ENST00000408537.1 ENST00000408537.1_15_35_+ 15–35 73.00 91.25 0.48 100.0 MIR1271-201 miRNA Karpas-422 (Cell line)
ENST00000408573.1 ENST00000408573.1_4_71_+ 4–71 26540.00 93.45 175.20 100.0 SNORD100-201 snoRNA Karpas-422 (Cell line)
ENST00000408573.1 ENST00000408573.1_4_36_+ 4–36 459.00 1.62 3.03 100.0 SNORD100-201 snoRNA Karpas-422 (Cell line)
ENST00000408573.1 ENST00000408573.1_26_71_+ 26–71 19.00 0.07 0.13 100.0 SNORD100-201 snoRNA Karpas-422 (Cell line)
ENST00000408573.1 ENST00000408573.1_4_52_+ 4–52 244.00 0.86 1.61 100.0 SNORD100-201 snoRNA Karpas-422 (Cell line)
ENST00000408587.1 ENST00000408587.1_43_74_+ 43–74 577.00 41.99 3.81 100.0 SNORD111B-201 snoRNA Karpas-422 (Cell line)
ENST00000410361.1 ENST00000410361.1_155_188_+ 155–188 98.00 3.25 0.65 100.0 RNU2-36P-201 snRNA Karpas-422 (Cell line)
ENST00000410361.1 ENST00000410361.1_79_116_+ 79–116 15.00 0.50 0.10 100.0 RNU2-36P-201 snRNA Karpas-422 (Cell line)
ENST00000410413.1 ENST00000410413.1_2_65_+ 2–65 354353.00 95.53 2339.16 97.25 SNORD19C-201 snoRNA Karpas-422 (Cell line)
ENST00000410413.1 ENST00000410413.1_33_65_+ 33–65 1419.00 0.38 9.37 100.0 SNORD19C-201 snoRNA Karpas-422 (Cell line)
ENST00000410433.1 ENST00000410433.1_7_54_+ 7–54 4864.00 5.33 32.11 100.0 SNORD12B-201 snoRNA Karpas-422 (Cell line)
ENST00000410433.1 ENST00000410433.1_31_84_+ 31–84 186.00 0.20 1.23 100.0 SNORD12B-201 snoRNA Karpas-422 (Cell line)
ENST00000410433.1 ENST00000410433.1_7_84_+ 7–84 81366.00 89.15 537.11 97.57 SNORD12B-201 snoRNA Karpas-422 (Cell line)
ENST00000410669.1 ENST00000410669.1_1_32_+ 1–32 567.00 22.76 3.74 100.0 Y_RNA.609-201 misc RNA Karpas-422 (Cell line)
ENST00000410717.1 ENST00000410717.1_15_31_+ 15–31 362.00 30.55 2.39 100.0 Y_RNA.612-201 misc RNA Karpas-422 (Cell line)
ENST00000411292.1 ENST00000411292.1_51_79_+ 51–79 57.00 0.16 0.38 100.0 SNORD71-201 snoRNA Karpas-422 (Cell line)
ENST00000411292.1 ENST00000411292.1_7_79_+ 7–79 34278.00 94.29 226.28 99.08 SNORD71-201 snoRNA Karpas-422 (Cell line)