ENCFF226BCZ

Library Details

Organism: Homo Sapiens
Biosample: Karpas-422 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR905KHW
Description: Part of ENCODE experiment ENCSR905KHW. The libraries contained in this experiment come from independent growths of cell line, Karpas-422. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000389680.2 ENST00000389680.2_2_90_+ 2–90 1.00 0.00 0.01 100.0 MT-RNR1-201 Mt rRNA Karpas-422 (Cell line)
ENST00000389680.2 ENST00000389680.2_316_354_+ 316–354 912.00 1.93 6.02 100.0 MT-RNR1-201 Mt rRNA Karpas-422 (Cell line)
ENST00000390180.1 ENST00000390180.1_64_86_+ 64–86 456.00 81.87 3.01 100.0 MIR454-201 miRNA Karpas-422 (Cell line)
ENST00000390204.1 ENST00000390204.1_51_72_+ 51–72 290.00 61.83 1.91 100.0 MIR501-201 miRNA Karpas-422 (Cell line)
ENST00000390225.1 ENST00000390225.1_30_51_+ 30–51 3633.00 88.18 23.98 100.0 MIR769-201 miRNA Karpas-422 (Cell line)
ENST00000390689.3 ENST00000390689.3_37_51_+ 37–51 108.00 73.97 0.71 100.0 KRTAP19-1-201 protein coding Karpas-422 (Cell line)
ENST00000390708.1 ENST00000390708.1_11_33_+ 11–33 15.00 27.27 0.10 100.0 MIR708-201 miRNA Karpas-422 (Cell line)
ENST00000390813.1 ENST00000390813.1_45_67_+ 45–67 1581.00 95.36 10.44 100.0 MIR301B-201 miRNA Karpas-422 (Cell line)
ENST00000390851.1 ENST00000390851.1_150_165_+ 150–165 4953.00 89.94 32.70 98.63 RNU1-82P-201 snRNA Karpas-422 (Cell line)
ENST00000390856.1 ENST00000390856.1_48_74_+ 48–74 1865.00 22.08 12.31 72.34 SNORD66-201 snoRNA Karpas-422 (Cell line)
ENST00000390856.1 ENST00000390856.1_1_75_+ 1–75 1863.00 22.05 12.30 100.0 SNORD66-201 snoRNA Karpas-422 (Cell line)
ENST00000390856.1 ENST00000390856.1_25_76_+ 25–76 477.00 5.65 3.15 100.0 SNORD66-201 snoRNA Karpas-422 (Cell line)
ENST00000390856.1 ENST00000390856.1_1_59_+ 1–59 253.00 2.99 1.67 100.0 SNORD66-201 snoRNA Karpas-422 (Cell line)
ENST00000390880.2 ENST00000390880.2_45_67_+ 45–67 597.00 50.42 3.94 100.0 U3.17-201 snoRNA Karpas-422 (Cell line)
ENST00000390930.1 ENST00000390930.1_207_235_+ 207–235 3219.00 71.36 21.25 100.0 SNORD17-201 snoRNA Karpas-422 (Cell line)
ENST00000390994.1 ENST00000390994.1_6_74_+ 6–74 3561.00 47.38 23.51 100.0 SNORD72-201 snoRNA Karpas-422 (Cell line)
ENST00000391007.1 ENST00000391007.1_9_77_+ 9–77 575.00 72.51 3.80 100.0 SNORD70B-201 snoRNA Karpas-422 (Cell line)
ENST00000391107.1 ENST00000391107.1_62_87_+ 62–87 7395.00 28.24 48.82 88.11 RNY4P18-201 misc RNA Karpas-422 (Cell line)
ENST00000391145.1 ENST00000391145.1_18_97_+ 18–97 13820.00 36.92 91.23 100.0 SNORD90-201 snoRNA Karpas-422 (Cell line)
ENST00000391145.1 ENST00000391145.1_18_100_+ 18–100 18405.00 49.17 121.50 84.23 SNORD90-201 snoRNA Karpas-422 (Cell line)
ENST00000391150.1 ENST00000391150.1_9_69_+ 9–69 21443.00 84.38 141.55 100.0 SNORD69-201 snoRNA Karpas-422 (Cell line)
ENST00000391150.1 ENST00000391150.1_35_69_+ 35–69 700.00 2.75 4.62 100.0 SNORD69-201 snoRNA Karpas-422 (Cell line)
ENST00000391150.1 ENST00000391150.1_9_48_+ 9–48 237.00 0.93 1.56 100.0 SNORD69-201 snoRNA Karpas-422 (Cell line)
ENST00000391150.1 ENST00000391150.1_9_35_+ 9–35 831.00 3.27 5.49 100.0 SNORD69-201 snoRNA Karpas-422 (Cell line)
ENST00000391232.1 ENST00000391232.1_9_80_+ 9–80 2736.00 69.41 18.06 91.23 SNORD70-201 snoRNA Karpas-422 (Cell line)