ENCFF226BCZ
Library Details
| Organism: | Homo Sapiens |
|---|---|
| Biosample: | Karpas-422 (Cell line) |
| GEO DB ID: | Not available |
| ENCODE Experiment ID: | ENCSR905KHW |
| Description: | Part of ENCODE experiment ENCSR905KHW. The libraries contained in this experiment come from independent growths of cell line, Karpas-422. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning. |
|---|---|
| Author: | Thomas Gingeras, CSHL |
sncRNAs in this Library
| Precursor Transcript ID | sncRNA Name | sncRNA position in precursor | Expression | Expression Fraction | Expression (CPM) | Prominence | Transcript Name | Transcript Type | Biosample |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000387377.1 | ENST00000387377.1_1_31_+ | 1–31 | 28409.00 | 58.39 | 187.53 | 90.92 | MT-TM-201 | Mt tRNA | Karpas-422 (Cell line) |
| ENST00000387405.1 | ENST00000387405.1_1_24_+ | 1–24 | 3167.00 | 36.03 | 20.91 | 100.0 | MT-TC-201 | Mt tRNA | Karpas-422 (Cell line) |
| ENST00000387409.1 | ENST00000387409.1_1_37_+ | 1–37 | 7004.00 | 7.11 | 46.23 | 65.17 | MT-TY-201 | Mt tRNA | Karpas-422 (Cell line) |
| ENST00000387409.1 | ENST00000387409.1_1_50_+ | 1–50 | 53.00 | 0.05 | 0.35 | 100.0 | MT-TY-201 | Mt tRNA | Karpas-422 (Cell line) |
| ENST00000387409.1 | ENST00000387409.1_1_32_+ | 1–32 | 15245.00 | 15.47 | 100.64 | 84.48 | MT-TY-201 | Mt tRNA | Karpas-422 (Cell line) |
| ENST00000387409.1 | ENST00000387409.1_1_56_+ | 1–56 | 2170.00 | 2.20 | 14.32 | 100.0 | MT-TY-201 | Mt tRNA | Karpas-422 (Cell line) |
| ENST00000387409.1 | ENST00000387409.1_1_65_+ | 1–65 | 39195.00 | 39.78 | 258.73 | 100.0 | MT-TY-201 | Mt tRNA | Karpas-422 (Cell line) |
| ENST00000387409.1 | ENST00000387409.1_1_28_+ | 1–28 | 14253.00 | 14.47 | 94.09 | 100.0 | MT-TY-201 | Mt tRNA | Karpas-422 (Cell line) |
| ENST00000387419.1 | ENST00000387419.1_1_51_+ | 1–51 | 86.00 | 8.38 | 0.57 | 100.0 | MT-TD-201 | Mt tRNA | Karpas-422 (Cell line) |
| ENST00000387421.1 | ENST00000387421.1_1_58_+ | 1–58 | 56215.00 | 27.94 | 371.09 | 100.0 | MT-TK-201 | Mt tRNA | Karpas-422 (Cell line) |
| ENST00000387421.1 | ENST00000387421.1_1_31_+ | 1–31 | 76.00 | 0.04 | 0.50 | 100.0 | MT-TK-201 | Mt tRNA | Karpas-422 (Cell line) |
| ENST00000387421.1 | ENST00000387421.1_1_52_+ | 1–52 | 113363.00 | 56.34 | 748.33 | 100.0 | MT-TK-201 | Mt tRNA | Karpas-422 (Cell line) |
| ENST00000387421.1 | ENST00000387421.1_1_28_+ | 1–28 | 1378.00 | 0.68 | 9.10 | 100.0 | MT-TK-201 | Mt tRNA | Karpas-422 (Cell line) |
| ENST00000387449.1 | ENST00000387449.1_1_26_+ | 1–26 | 1702.00 | 20.76 | 11.24 | 100.0 | MT-TS2-201 | Mt tRNA | Karpas-422 (Cell line) |
| ENST00000387449.1 | ENST00000387449.1_1_53_+ | 1–53 | 127.00 | 1.55 | 0.84 | 100.0 | MT-TS2-201 | Mt tRNA | Karpas-422 (Cell line) |
| ENST00000387449.1 | ENST00000387449.1_1_20_+ | 1–20 | 2574.00 | 31.39 | 16.99 | 87.2 | MT-TS2-201 | Mt tRNA | Karpas-422 (Cell line) |
| ENST00000387456.1 | ENST00000387456.1_1_31_+ | 1–31 | 4222.00 | 8.24 | 27.87 | 100.0 | MT-TL2-201 | Mt tRNA | Karpas-422 (Cell line) |
| ENST00000387459.1 | ENST00000387459.1_24_69_+ | 24–69 | 156.00 | 0.03 | 1.03 | 100.0 | MT-TE-201 | Mt tRNA | Karpas-422 (Cell line) |
| ENST00000387459.1 | ENST00000387459.1_1_69_+ | 1–69 | 377272.00 | 67.09 | 2490.45 | 90.94 | MT-TE-201 | Mt tRNA | Karpas-422 (Cell line) |
| ENST00000387459.1 | ENST00000387459.1_1_57_+ | 1–57 | 6041.00 | 1.07 | 39.88 | 100.0 | MT-TE-201 | Mt tRNA | Karpas-422 (Cell line) |
| ENST00000387459.1 | ENST00000387459.1_13_67_+ | 13–67 | 5692.00 | 1.01 | 37.57 | 100.0 | MT-TE-201 | Mt tRNA | Karpas-422 (Cell line) |
| ENST00000387459.1 | ENST00000387459.1_1_62_+ | 1–62 | 6126.00 | 1.09 | 40.44 | 76.54 | MT-TE-201 | Mt tRNA | Karpas-422 (Cell line) |
| ENST00000387459.1 | ENST00000387459.1_40_67_+ | 40–67 | 12254.00 | 2.18 | 80.89 | 76.59 | MT-TE-201 | Mt tRNA | Karpas-422 (Cell line) |
| ENST00000387459.1 | ENST00000387459.1_39_69_+ | 39–69 | 3746.00 | 0.67 | 24.73 | 35.3 | MT-TE-201 | Mt tRNA | Karpas-422 (Cell line) |
| ENST00000388006.1 | ENST00000388006.1_7_28_+ | 7–28 | 5.00 | 100.00 | 0.03 | 100.0 | MIR196A1-201 | miRNA | Karpas-422 (Cell line) |