ENCFF225QQQ

Library Details

Organism: Homo Sapiens
Biosample: mesenchymal stem cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR586TYR
Description: Part of ENCODE experiment ENCSR586TYR.
Author: Joe Ecker, Salk

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000488946.1 ENST00000488946.1_804_886_+ 804–886 175.00 2.30 0.79 96.15 RPL13A-212 retained intron mesenchymal stem cell (In vitro differentiated cells)
ENST00000488946.1 ENST00000488946.1_197_235_+ 197–235 134.00 1.76 0.60 100.0 RPL13A-212 retained intron mesenchymal stem cell (In vitro differentiated cells)
ENST00000488946.1 ENST00000488946.1_844_886_+ 844–886 8.00 0.10 0.04 100.0 RPL13A-212 retained intron mesenchymal stem cell (In vitro differentiated cells)
ENST00000489392.1 ENST00000489392.1_116_191_+ 116–191 327.00 6.61 1.48 86.97 RPL7A-207 protein coding CDS not defined mesenchymal stem cell (In vitro differentiated cells)
ENST00000489392.1 ENST00000489392.1_151_191_+ 151–191 1501.00 30.34 6.78 100.0 RPL7A-207 protein coding CDS not defined mesenchymal stem cell (In vitro differentiated cells)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 377.00 7.62 1.70 100.0 RPL7A-207 protein coding CDS not defined mesenchymal stem cell (In vitro differentiated cells)
ENST00000490232.3 ENST00000490232.3_229_300_+ 229–300 3.00 0.12 0.01 5.77 RN7SL2-201 misc RNA mesenchymal stem cell (In vitro differentiated cells)
ENST00000490232.3 ENST00000490232.3_219_300_+ 219–300 1.00 0.04 0.00 100.0 RN7SL2-201 misc RNA mesenchymal stem cell (In vitro differentiated cells)
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 897.00 47.69 4.05 99.67 NOP56-217 protein coding CDS not defined mesenchymal stem cell (In vitro differentiated cells)
ENST00000494697.5 ENST00000494697.5_274_348_+ 274–348 124.00 6.59 0.56 98.41 NOP56-217 protein coding CDS not defined mesenchymal stem cell (In vitro differentiated cells)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 26.00 0.16 0.12 83.87 RABGGTB-213 protein coding CDS not defined mesenchymal stem cell (In vitro differentiated cells)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 216.00 1.36 0.98 100.0 RABGGTB-213 protein coding CDS not defined mesenchymal stem cell (In vitro differentiated cells)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 2532.00 15.98 11.43 98.52 RABGGTB-213 protein coding CDS not defined mesenchymal stem cell (In vitro differentiated cells)
ENST00000496055.5 ENST00000496055.5_471_515_+ 471–515 65.00 0.41 0.29 18.52 RABGGTB-213 protein coding CDS not defined mesenchymal stem cell (In vitro differentiated cells)
ENST00000496055.5 ENST00000496055.5_493_553_+ 493–553 215.00 1.36 0.97 100.0 RABGGTB-213 protein coding CDS not defined mesenchymal stem cell (In vitro differentiated cells)
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 286.00 1.80 1.29 81.48 RABGGTB-213 protein coding CDS not defined mesenchymal stem cell (In vitro differentiated cells)
ENST00000496055.5 ENST00000496055.5_505_553_+ 505–553 3811.00 24.05 17.20 100.0 RABGGTB-213 protein coding CDS not defined mesenchymal stem cell (In vitro differentiated cells)
ENST00000496254.5 ENST00000496254.5_774_811_+ 774–811 2923.00 56.34 13.20 100.0 GNL3-211 retained intron mesenchymal stem cell (In vitro differentiated cells)
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 479.00 9.23 2.16 100.0 GNL3-211 retained intron mesenchymal stem cell (In vitro differentiated cells)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 14.00 1.89 0.06 100.0 RPL5-205 retained intron mesenchymal stem cell (In vitro differentiated cells)
ENST00000497519.1 ENST00000497519.1_681_708_+ 681–708 589.00 79.49 2.66 100.0 RPL5-205 retained intron mesenchymal stem cell (In vitro differentiated cells)
ENST00000499525.1 ENST00000499525.1_506_558_+ 506–558 341.00 3.43 1.54 100.0 ZBED9-AS1-201 lncRNA mesenchymal stem cell (In vitro differentiated cells)
ENST00000507485.1 ENST00000507485.1_1149_1210_+ 1149–1210 587.00 56.17 2.65 100.0 RPS3A-206 retained intron mesenchymal stem cell (In vitro differentiated cells)
ENST00000509578.1 ENST00000509578.1_1330_1389_+ 1330–1389 4041.00 70.96 18.24 100.0 COX7C-203 protein coding mesenchymal stem cell (In vitro differentiated cells)
ENST00000513027.3 ENST00000513027.3_263_305_+ 263–305 51.00 0.61 0.23 100.0 RACK1-229 protein coding mesenchymal stem cell (In vitro differentiated cells)