ENCFF225QQQ

Library Details

Organism: Homo Sapiens
Biosample: mesenchymal stem cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR586TYR
Description: Part of ENCODE experiment ENCSR586TYR.
Author: Joe Ecker, Salk

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000437139.7 ENST00000437139.7_1209_1267_+ 1209–1267 46.00 6.31 0.21 61.33 TMEM107-204 protein coding mesenchymal stem cell (In vitro differentiated cells)
ENST00000448136.6 ENST00000448136.6_1027_1095_+ 1027–1095 10.00 1.93 0.05 76.92 SNHG16-201 lncRNA mesenchymal stem cell (In vitro differentiated cells)
ENST00000448136.6 ENST00000448136.6_1026_1098_+ 1026–1098 9.00 1.74 0.04 100.0 SNHG16-201 lncRNA mesenchymal stem cell (In vitro differentiated cells)
ENST00000458770.1 ENST00000458770.1_7_74_+ 7–74 929.00 70.43 4.19 98.31 SNORD105B-201 snoRNA mesenchymal stem cell (In vitro differentiated cells)
ENST00000458838.1 ENST00000458838.1_8_75_+ 8–75 55.00 13.65 0.25 96.49 SNORD121B-201 snoRNA mesenchymal stem cell (In vitro differentiated cells)
ENST00000458892.1 ENST00000458892.1_5_80_+ 5–80 738.00 72.00 3.33 99.06 SNORD127-201 snoRNA mesenchymal stem cell (In vitro differentiated cells)
ENST00000458893.1 ENST00000458893.1_3_64_+ 3–64 510.00 43.93 2.30 100.0 SNORD42B-201 snoRNA mesenchymal stem cell (In vitro differentiated cells)
ENST00000459254.1 ENST00000459254.1_69_90_+ 69–90 263.00 5.41 1.19 100.0 RNY4P25-201 misc RNA mesenchymal stem cell (In vitro differentiated cells)
ENST00000459386.1 ENST00000459386.1_9_73_+ 9–73 13.00 7.47 0.06 100.0 SNORD121A-201 snoRNA mesenchymal stem cell (In vitro differentiated cells)
ENST00000459475.1 ENST00000459475.1_4_75_+ 4–75 22.00 2.33 0.10 53.66 SNORD126-201 snoRNA mesenchymal stem cell (In vitro differentiated cells)
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 64.00 6.77 0.29 83.12 SNORD126-201 snoRNA mesenchymal stem cell (In vitro differentiated cells)
ENST00000459577.1 ENST00000459577.1_12_91_+ 12–91 221.00 38.70 1.00 93.25 SNORD124-201 snoRNA mesenchymal stem cell (In vitro differentiated cells)
ENST00000467105.1 ENST00000467105.1_581_668_+ 581–668 118.00 7.52 0.53 90.08 RPL3-212 retained intron mesenchymal stem cell (In vitro differentiated cells)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 44.00 2.80 0.20 100.0 RPL3-212 retained intron mesenchymal stem cell (In vitro differentiated cells)
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 72432.00 98.31 326.98 100.0 SMC1A-204 retained intron mesenchymal stem cell (In vitro differentiated cells)
ENST00000471759.5 ENST00000471759.5_372_449_+ 372–449 1377.00 17.75 6.22 99.42 RABGGTB-208 protein coding CDS not defined mesenchymal stem cell (In vitro differentiated cells)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 195.00 9.75 0.88 100.0 DDX39B-219 retained intron mesenchymal stem cell (In vitro differentiated cells)
ENST00000481456.1 ENST00000481456.1_825_898_+ 825–898 4.00 0.20 0.02 57.14 DDX39B-219 retained intron mesenchymal stem cell (In vitro differentiated cells)
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 1089.00 54.42 4.92 100.0 DDX39B-219 retained intron mesenchymal stem cell (In vitro differentiated cells)
ENST00000484599.1 ENST00000484599.1_580_645_+ 580–645 79.00 6.24 0.36 100.0 RPS8-206 protein coding CDS not defined mesenchymal stem cell (In vitro differentiated cells)
ENST00000484610.5 ENST00000484610.5_361_433_+ 361–433 257.00 8.80 1.16 100.0 RPL13-207 retained intron mesenchymal stem cell (In vitro differentiated cells)
ENST00000484610.5 ENST00000484610.5_392_433_+ 392–433 1941.00 66.43 8.76 100.0 RPL13-207 retained intron mesenchymal stem cell (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_343_400_+ 343–400 2106.00 2.57 9.51 96.3 EIF4A2-219 retained intron mesenchymal stem cell (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 3915.00 4.79 17.67 47.76 EIF4A2-219 retained intron mesenchymal stem cell (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_348_405_+ 348–405 56.00 0.07 0.25 15.47 EIF4A2-219 retained intron mesenchymal stem cell (In vitro differentiated cells)