ENCFF222USQ

Library Details

Organism: Homo Sapiens
Biosample: smooth muscle cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR250STJ
Description: Part of ENCODE experiment ENCSR250STJ. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded SE101 length Hi-Seq reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR1-121016845 tRNA-transcript-chr1-121016845_3_32_+ 3–32 37889.00 49.12 28.24 94.19 TRNA-TRANSCRIPT-CHR1-121016845 Gly tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-121016845 tRNA-transcript-chr1-121016845_2_52_+ 2–52 11700.00 15.17 8.72 100.0 TRNA-TRANSCRIPT-CHR1-121016845 Gly tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-121020729 tRNA-transcript-chr1-121020729_1_54_+ 1–54 3525.00 0.28 2.63 100.0 TRNA-TRANSCRIPT-CHR1-121020729 Val tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-145157157 tRNA-transcript-chr1-145157157_1_23_+ 1–23 934.00 31.44 0.70 100.0 TRNA-TRANSCRIPT-CHR1-145157157 Val tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-145157157 tRNA-transcript-chr1-145157157_1_33_+ 1–33 1197.00 40.29 0.89 100.0 TRNA-TRANSCRIPT-CHR1-145157157 Val tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-146037061 tRNA-transcript-chr1-146037061_1_53_+ 1–53 2401.00 29.97 1.79 100.0 TRNA-TRANSCRIPT-CHR1-146037061 Gly tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-148032790 tRNA-transcript-chr1-148032790_1_53_+ 1–53 3202.00 27.56 2.39 100.0 TRNA-TRANSCRIPT-CHR1-148032790 Gln tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-149692805 tRNA-transcript-chr1-149692805_4_33_+ 4–33 660.00 8.13 0.49 62.74 TRNA-TRANSCRIPT-CHR1-149692805 Pseudo tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-149712552 tRNA-transcript-chr1-149712552_1_39_+ 1–39 5301.00 0.42 3.95 100.0 TRNA-TRANSCRIPT-CHR1-149712552 Val tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-161440825 tRNA-transcript-chr1-161440825_4_34_+ 4–34 16772.00 21.96 12.50 86.96 TRNA-TRANSCRIPT-CHR1-161440825 Asp tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-161440825 tRNA-transcript-chr1-161440825_32_53_+ 32–53 38.00 0.05 0.03 100.0 TRNA-TRANSCRIPT-CHR1-161440825 Asp tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-161440825 tRNA-transcript-chr1-161440825_40_71_+ 40–71 7126.00 9.33 5.31 100.0 TRNA-TRANSCRIPT-CHR1-161440825 Asp tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-161448951 tRNA-transcript-chr1-161448951_1_26_+ 1–26 4616.00 33.71 3.44 100.0 TRNA-TRANSCRIPT-CHR1-161448951 Leu tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_1_53_+ 1–53 4301.00 0.75 3.21 100.0 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_14_49_+ 14–49 21409.00 3.71 15.96 84.84 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_21_34_+ 21–34 154.00 0.03 0.11 100.0 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_16_42_+ 16–42 4880.00 0.85 3.64 84.21 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_4_33_+ 4–33 33820.00 5.87 25.21 39.77 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_1_72_+ 1–72 123.00 0.02 0.09 100.0 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_21_49_+ 21–49 229.00 0.04 0.17 100.0 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-161480566 tRNA-transcript-chr1-161480566_1_32_+ 1–32 320.00 41.83 0.24 100.0 TRNA-TRANSCRIPT-CHR1-161480566 Gly tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-16545939 tRNA-transcript-chr1-16545939_1_52_+ 1–52 146651.00 8.59 109.31 97.28 TRNA-TRANSCRIPT-CHR1-16545939 Gly tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-16678271 tRNA-transcript-chr1-16678271_1_32_+ 1–32 501.00 22.57 0.37 100.0 TRNA-TRANSCRIPT-CHR1-16678271 Gly tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-16678271 tRNA-transcript-chr1-16678271_14_32_+ 14–32 324.00 14.59 0.24 100.0 TRNA-TRANSCRIPT-CHR1-16678271 Gly tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-16727285 tRNA-transcript-chr1-16727285_2_32_+ 2–32 12059.00 50.22 8.99 100.0 TRNA-TRANSCRIPT-CHR1-16727285 Gly tRNA smooth muscle cell (In vitro differentiated cells)