ENCFF222USQ

Library Details

Organism: Homo Sapiens
Biosample: smooth muscle cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR250STJ
Description: Part of ENCODE experiment ENCSR250STJ. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded SE101 length Hi-Seq reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000823279.1 ENST00000823279.1_86_169_+ 86–169 690.00 1.37 0.51 100.0 ENST00000823279 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000823279.1 ENST00000823279.1_78_169_+ 78–169 6047.00 11.97 4.51 99.59 ENST00000823279 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000823279.1 ENST00000823279.1_107_169_+ 107–169 2255.17 4.47 1.68 37.37 ENST00000823279 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000823279.1 ENST00000823279.1_105_169_+ 105–169 4090.07 8.10 3.05 51.85 ENST00000823279 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000823279.1 ENST00000823279.1_131_169_+ 131–169 610.00 1.21 0.45 85.31 ENST00000823279 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000823279.1 ENST00000823279.1_151_169_+ 151–169 3277.09 6.49 2.44 20.98 ENST00000823279 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000823801.1 ENST00000823801.1_153_169_+ 153–169 13558.73 26.85 10.11 82.57 ENST00000823801 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000827714.1 ENST00000827714.1_110_129_+ 110–129 51.00 76.12 0.04 91.07 ENST00000827714 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000827714.1 ENST00000827714.1_110_131_+ 110–131 5.00 7.46 0.00 8.93 ENST00000827714 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000828033.1 ENST00000828033.1_252_322_+ 252–322 11020.00 6.41 8.21 100.0 GAS5-377 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000828033.1 ENST00000828033.1_278_318_+ 278–318 128.00 0.07 0.10 100.0 GAS5-377 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000828033.1 ENST00000828033.1_290_318_+ 290–318 2272.00 1.32 1.69 100.0 GAS5-377 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000828033.1 ENST00000828033.1_252_318_+ 252–318 154331.00 89.74 115.03 100.0 GAS5-377 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000830954.1 ENST00000830954.1_968_989_+ 968–989 5030.00 84.20 3.75 100.0 MIR205HG-245 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000833535.1 ENST00000833535.1_763_828_+ 763–828 392.00 11.35 0.29 100.0 TAF12-DT-204 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000836993.1 ENST00000836993.1_387_463_+ 387–463 1027358.00 97.01 765.74 99.75 ZFAS1-238 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000836993.1 ENST00000836993.1_422_463_+ 422–463 1009.00 0.10 0.75 100.0 ZFAS1-238 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000836993.1 ENST00000836993.1_402_463_+ 402–463 601.00 0.06 0.45 100.0 ZFAS1-238 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000836993.1 ENST00000836993.1_410_463_+ 410–463 4040.00 0.38 3.01 100.0 ZFAS1-238 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000836997.1 ENST00000836997.1_305_352_+ 305–352 10795.00 6.74 8.05 100.0 ZFAS1-242 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000836997.1 ENST00000836997.1_305_380_+ 305–380 144172.00 90.05 107.46 100.0 ZFAS1-242 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000837997.1 ENST00000837997.1_211_224_+ 211–224 292.00 41.42 0.22 100.0 ENST00000837997 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000837997.1 ENST00000837997.1_214_225_+ 214–225 170.00 24.11 0.13 100.0 ENST00000837997 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000839036.1 ENST00000839036.1_40_61_+ 40–61 2769.00 45.87 2.06 54.8 ENST00000839036 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000849527.1 ENST00000849527.1_293_307_+ 293–307 96.00 4.20 0.07 100.0 ENST00000849527 lncRNA smooth muscle cell (In vitro differentiated cells)