ENCFF222USQ

Library Details

Organism: Homo Sapiens
Biosample: smooth muscle cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR250STJ
Description: Part of ENCODE experiment ENCSR250STJ. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded SE101 length Hi-Seq reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000776279.1 ENST00000776279.1_161_206_+ 161–206 590.00 0.02 0.44 100.0 SNHG25-206 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000776279.1 ENST00000776279.1_176_234_+ 176–234 514.17 0.01 0.38 51.31 SNHG25-206 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000776279.1 ENST00000776279.1_172_234_+ 172–234 604.11 0.02 0.45 56.41 SNHG25-206 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000776279.1 ENST00000776279.1_174_234_+ 174–234 642.16 0.02 0.48 36.14 SNHG25-206 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000776279.1 ENST00000776279.1_196_234_+ 196–234 4023.00 0.11 3.00 87.76 SNHG25-206 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000776279.1 ENST00000776279.1_184_234_+ 184–234 545.00 0.01 0.41 100.0 SNHG25-206 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000778783.1 ENST00000778783.1_84_171_+ 84–171 134.00 31.09 0.10 100.0 ENST00000778783 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000779378.1 ENST00000779378.1_905_928_+ 905–928 337.00 84.25 0.25 93.87 MIR155HG-205 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000785178.1 ENST00000785178.1_899_938_+ 899–938 2561.00 31.56 1.91 100.0 ENST00000785178 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000786284.1 ENST00000786284.1_38_80_+ 38–80 1021.00 5.69 0.76 51.91 ENST00000786284 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000786284.1 ENST00000786284.1_46_80_+ 46–80 6012.00 33.51 4.48 100.0 ENST00000786284 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000786284.1 ENST00000786284.1_40_80_+ 40–80 946.00 5.27 0.71 51.69 ENST00000786284 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000788343.1 ENST00000788343.1_17_107_+ 17–107 2807.00 20.88 2.09 92.0 ENST00000788343 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000797550.1 ENST00000797550.1_7_63_+ 7–63 13479.50 24.19 10.05 50.13 ENST00000797550 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000797550.1 ENST00000797550.1_9_63_+ 9–63 6932.88 12.44 5.17 25.78 ENST00000797550 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000797550.1 ENST00000797550.1_9_52_+ 9–52 19236.00 34.53 14.34 99.02 ENST00000797550 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000806893.1 ENST00000806893.1_425_447_+ 425–447 839140.00 84.52 625.45 97.15 MIR181A1HG-212 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000806893.1 ENST00000806893.1_465_486_+ 465–486 5184.00 0.52 3.86 100.0 MIR181A1HG-212 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000812667.1 ENST00000812667.1_308_348_+ 308–348 506.00 20.06 0.38 100.0 C19orf48P-218 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000812667.1 ENST00000812667.1_307_393_+ 307–393 1056.00 41.87 0.79 100.0 C19orf48P-218 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000815283.1 ENST00000815283.1_298_361_+ 298–361 139630.00 86.31 104.07 94.36 SNHG18-220 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000817026.1 ENST00000817026.1_659_679_+ 659–679 677.00 19.53 0.50 100.0 ENST00000817026 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000823279.1 ENST00000823279.1_126_169_+ 126–169 107.00 0.21 0.08 100.0 ENST00000823279 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000823279.1 ENST00000823279.1_109_169_+ 109–169 1020.14 2.02 0.76 49.59 ENST00000823279 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000823279.1 ENST00000823279.1_103_169_+ 103–169 2419.00 4.79 1.80 42.43 ENST00000823279 lncRNA smooth muscle cell (In vitro differentiated cells)