ENCFF222USQ

Library Details

Organism: Homo Sapiens
Biosample: smooth muscle cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR250STJ
Description: Part of ENCODE experiment ENCSR250STJ. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded SE101 length Hi-Seq reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668505.1 ENST00000668505.1_1278_1340_+ 1278–1340 3805.00 0.16 2.84 100.0 SNHG5-273 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668505.1 ENST00000668505.1_1272_1352_+ 1272–1352 9.00 0.00 0.01 90.0 SNHG5-273 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668505.1 ENST00000668505.1_1278_1361_+ 1278–1361 27462.00 1.17 20.47 95.02 SNHG5-273 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000669673.1 ENST00000669673.1_3794_3884_+ 3794–3884 3350.00 12.77 2.50 84.85 SNHG14-323 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000670680.1 ENST00000670680.1_10_70_+ 10–70 12.00 0.02 0.01 100.0 MEG8-251 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000670680.1 ENST00000670680.1_34_69_+ 34–69 68.00 0.12 0.05 35.79 MEG8-251 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000670680.1 ENST00000670680.1_2_69_+ 2–69 48095.00 84.45 35.85 96.38 MEG8-251 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000670680.1 ENST00000670680.1_36_69_+ 36–69 160.00 0.28 0.12 72.4 MEG8-251 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000670680.1 ENST00000670680.1_1539_1602_+ 1539–1602 3245.00 5.70 2.42 71.02 MEG8-251 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000670697.1 ENST00000670697.1_233_310_+ 233–310 117011.00 76.04 87.21 94.57 SNHG14-336 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000670697.1 ENST00000670697.1_232_313_+ 232–313 28232.00 18.35 21.04 34.43 SNHG14-336 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000671491.1 ENST00000671491.1_1778_1868_+ 1778–1868 69437.00 87.73 51.75 98.71 SNHG14-341 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000676514.1 ENST00000676514.1_1978_2054_+ 1978–2054 331.00 10.19 0.25 100.0 NCL-211 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000677786.1 ENST00000677786.1_3513_3605_+ 3513–3605 4.00 0.18 0.00 100.0 NCL-216 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000679646.1 ENST00000679646.1_899_921_+ 899–921 3579.00 62.41 2.67 100.0 FMN2-209 protein coding CDS not defined smooth muscle cell (In vitro differentiated cells)
ENST00000685142.3 ENST00000685142.3_1449_1480_+ 1449–1480 567.00 6.47 0.42 100.0 LINC02739-203 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000685142.3 ENST00000685142.3_1409_1423_+ 1409–1423 159.00 1.81 0.12 49.07 LINC02739-203 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000685142.3 ENST00000685142.3_1421_1436_+ 1421–1436 509.00 5.81 0.38 100.0 LINC02739-203 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000685142.3 ENST00000685142.3_1409_1440_+ 1409–1440 1328.00 15.15 0.99 100.0 LINC02739-203 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000685142.3 ENST00000685142.3_1405_1444_+ 1405–1444 756.00 8.63 0.56 100.0 LINC02739-203 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000685142.3 ENST00000685142.3_1409_1421_+ 1409–1421 165.00 1.88 0.12 50.93 LINC02739-203 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000685227.3 ENST00000685227.3_1036_1055_+ 1036–1055 1.00 16.67 0.00 100.0 MIR124-1HG-216 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000685307.3 ENST00000685307.3_1198_1226_+ 1198–1226 269.00 2.73 0.20 100.0 SNHG10-212 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000686899.3 ENST00000686899.3_568_649_+ 568–649 157479.89 51.30 117.38 52.48 SNHG19-202 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000686899.3 ENST00000686899.3_568_647_+ 568–647 142998.64 46.58 106.58 61.32 SNHG19-202 lncRNA smooth muscle cell (In vitro differentiated cells)