ENCFF222USQ

Library Details

Organism: Homo Sapiens
Biosample: smooth muscle cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR250STJ
Description: Part of ENCODE experiment ENCSR250STJ. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded SE101 length Hi-Seq reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000667788.1 ENST00000667788.1_3_90_+ 3–90 6440.78 15.23 4.80 20.82 SNHG14-312 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000667788.1 ENST00000667788.1_2_92_+ 2–92 24894.21 58.87 18.55 80.47 SNHG14-312 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000667788.1 ENST00000667788.1_16_92_+ 16–92 61.00 0.14 0.05 100.0 SNHG14-312 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000667814.1 ENST00000667814.1_36_68_+ 36–68 22.00 0.06 0.02 100.0 MEG8-244 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000667814.1 ENST00000667814.1_2_32_+ 2–32 72.00 0.20 0.05 100.0 MEG8-244 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000667814.1 ENST00000667814.1_2_68_+ 2–68 35230.00 96.84 26.26 98.89 MEG8-244 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_295_321_+ 295–321 2083.00 0.02 1.55 100.0 SNHG1-248 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_2490_2559_+ 2490–2559 198.00 0.00 0.15 100.0 SNHG1-248 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_2195_2223_+ 2195–2223 10117.00 0.10 7.54 98.56 SNHG1-248 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_523_581_+ 523–581 1780.65 0.02 1.33 47.26 SNHG1-248 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_1946_1982_+ 1946–1982 6656.00 0.07 4.96 87.79 SNHG1-248 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_1921_1982_+ 1921–1982 5106900.00 51.14 3806.41 99.47 SNHG1-248 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_2522_2560_+ 2522–2560 548.00 0.01 0.41 62.49 SNHG1-248 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_2157_2223_+ 2157–2223 109848.00 1.10 81.87 99.56 SNHG1-248 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_2532_2560_+ 2532–2560 5102.00 0.05 3.80 100.0 SNHG1-248 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_2496_2560_+ 2496–2560 2508110.00 25.12 1869.41 99.95 SNHG1-248 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_523_570_+ 523–570 4804.00 0.05 3.58 100.0 SNHG1-248 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_847_874_+ 847–874 361.00 0.00 0.27 100.0 SNHG1-248 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_523_549_+ 523–549 1333.00 0.01 0.99 100.0 SNHG1-248 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_1194_1268_+ 1194–1268 6161.00 0.06 4.59 100.0 SNHG1-248 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_523_584_+ 523–584 1974.00 0.02 1.47 100.0 SNHG1-248 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_287_322_+ 287–322 1449.00 0.01 1.08 100.0 SNHG1-248 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_2157_2173_+ 2157–2173 164323.00 1.65 122.48 100.0 SNHG1-248 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_258_296_+ 258–296 748.00 0.01 0.56 100.0 SNHG1-248 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_2184_2223_+ 2184–2223 981.00 0.01 0.73 100.0 SNHG1-248 lncRNA smooth muscle cell (In vitro differentiated cells)