ENCFF222USQ

Library Details

Organism: Homo Sapiens
Biosample: smooth muscle cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR250STJ
Description: Part of ENCODE experiment ENCSR250STJ. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded SE101 length Hi-Seq reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000651323.1 ENST00000651323.1_5199_5247_+ 5199–5247 647.00 1.14 0.48 28.22 CTC1-214 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000651323.1 ENST00000651323.1_5233_5247_+ 5233–5247 13673.00 24.18 10.19 97.41 CTC1-214 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000651323.1 ENST00000651323.1_5163_5174_+ 5163–5174 2575.00 4.55 1.92 74.92 CTC1-214 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000651323.1 ENST00000651323.1_5201_5247_+ 5201–5247 1646.00 2.91 1.23 71.78 CTC1-214 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000651323.1 ENST00000651323.1_5163_5177_+ 5163–5177 2045.00 3.62 1.52 77.46 CTC1-214 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000651323.1 ENST00000651323.1_5214_5247_+ 5214–5247 24118.00 42.65 17.98 100.0 CTC1-214 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000651323.1 ENST00000651323.1_5163_5185_+ 5163–5185 2020.00 3.57 1.51 100.0 CTC1-214 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000651323.1 ENST00000651323.1_5230_5247_+ 5230–5247 1138.00 2.01 0.85 100.0 CTC1-214 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000651540.1 ENST00000651540.1_6_45_+ 6–45 15644.00 10.24 11.66 81.42 ENST00000651540 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000651540.1 ENST00000651540.1_57_88_+ 57–88 9156.00 5.99 6.82 97.09 ENST00000651540 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000651540.1 ENST00000651540.1_6_55_+ 6–55 945.00 0.62 0.70 100.0 ENST00000651540 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000651540.1 ENST00000651540.1_6_33_+ 6–33 7434.00 4.87 5.54 54.85 ENST00000651540 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000651540.1 ENST00000651540.1_70_88_+ 70–88 69.00 0.05 0.05 100.0 ENST00000651540 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000651540.1 ENST00000651540.1_6_75_+ 6–75 340.00 0.22 0.25 100.0 ENST00000651540 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000651540.1 ENST00000651540.1_6_79_+ 6–79 2984.00 1.95 2.22 100.0 ENST00000651540 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000651540.1 ENST00000651540.1_6_28_+ 6–28 297.00 0.19 0.22 100.0 ENST00000651540 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000651540.1 ENST00000651540.1_6_88_+ 6–88 173.00 0.11 0.13 100.0 ENST00000651540 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000651540.1 ENST00000651540.1_6_36_+ 6–36 22315.00 14.60 16.63 49.97 ENST00000651540 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000651540.1 ENST00000651540.1_6_51_+ 6–51 4454.00 2.91 3.32 100.0 ENST00000651540 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000651540.1 ENST00000651540.1_6_39_+ 6–39 62422.00 40.85 46.53 82.42 ENST00000651540 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000652769.2 ENST00000652769.2_3101_3122_+ 3101–3122 24.00 0.17 0.02 100.0 MIRLET7A1HG-203 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000653102.1 ENST00000653102.1_9_77_+ 9–77 4210.00 86.80 3.14 100.0 MEG8-225 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000654356.2 ENST00000654356.2_1000_1070_+ 1000–1070 893943.00 88.56 666.30 100.0 SNHG29-232 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000654356.2 ENST00000654356.2_1368_1394_+ 1368–1394 414.00 0.04 0.31 100.0 SNHG29-232 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000654356.2 ENST00000654356.2_1402_1442_+ 1402–1442 120.00 0.01 0.09 100.0 SNHG29-232 lncRNA smooth muscle cell (In vitro differentiated cells)