ENCFF222USQ

Library Details

Organism: Homo Sapiens
Biosample: smooth muscle cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR250STJ
Description: Part of ENCODE experiment ENCSR250STJ. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded SE101 length Hi-Seq reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000600027.5 ENST00000600027.5_434_519_+ 434–519 9743.00 48.26 7.26 100.0 RPS11-206 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000600027.5 ENST00000600027.5_441_519_+ 441–519 6685.00 33.12 4.98 100.0 RPS11-206 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000602315.3 ENST00000602315.3_752_771_+ 752–771 372212.00 80.57 277.43 82.1 CARMN-209 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000602478.2 ENST00000602478.2_671_758_+ 671–758 5387.00 42.24 4.02 100.0 ENST00000602478 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000604535.1 ENST00000604535.1_1396_1410_+ 1396–1410 169.00 23.77 0.13 100.0 PPFIA1P1-201 processed pseudogene smooth muscle cell (In vitro differentiated cells)
ENST00000606412.1 ENST00000606412.1_4_67_+ 4–67 1490.00 57.18 1.11 100.0 SNORD114-21-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000606412.1 ENST00000606412.1_35_67_+ 35–67 348.00 13.35 0.26 100.0 SNORD114-21-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000606510.1 ENST00000606510.1_2_82_+ 2–82 5981.00 62.01 4.46 100.0 SNORD115-40-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000606724.1 ENST00000606724.1_22_43_+ 22–43 32.00 100.00 0.02 100.0 MIR98-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000607261.1 ENST00000607261.1_3_73_+ 3–73 7952.00 93.95 5.93 100.0 SNORD113-5-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000607334.3 ENST00000607334.3_14_34_+ 14–34 27.00 96.43 0.02 100.0 MIR15A-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000607441.3 ENST00000607441.3_43_63_+ 43–63 8.00 80.00 0.01 100.0 MIR376C-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000607520.2 ENST00000607520.2_5465_5487_+ 5465–5487 751.00 59.18 0.56 100.0 SNHG21-206 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000607707.1 ENST00000607707.1_5_84_+ 5–84 17581.00 94.03 13.10 100.0 SNORD11B-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000608459.2 ENST00000608459.2_31_111_+ 31–111 7541.00 81.17 5.62 100.0 SNORD91B-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000609620.2 ENST00000609620.2_7_86_+ 7–86 38629.00 65.77 28.79 72.49 SNORD91A-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000612171.2 ENST00000612171.2_4_25_+ 4–25 1938.00 43.35 1.44 94.81 MIR486-1-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000612233.1 ENST00000612233.1_1528_1597_+ 1528–1597 77194.00 36.67 57.54 63.22 NOP56-219 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000612233.1 ENST00000612233.1_1528_1583_+ 1528–1583 1596.00 0.76 1.19 100.0 NOP56-219 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000612233.1 ENST00000612233.1_1528_1555_+ 1528–1555 2284.00 1.09 1.70 100.0 NOP56-219 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000612233.1 ENST00000612233.1_1212_1282_+ 1212–1282 62262.00 29.58 46.41 85.41 NOP56-219 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000612463.1 ENST00000612463.1_1_83_+ 1–83 2860.00 7.43 2.13 75.92 RNA5-8SN2-201 rRNA smooth muscle cell (In vitro differentiated cells)
ENST00000612463.1 ENST00000612463.1_81_123_+ 81–123 1559.65 4.05 1.16 66.31 RNA5-8SN2-201 rRNA smooth muscle cell (In vitro differentiated cells)
ENST00000612463.1 ENST00000612463.1_1_50_+ 1–50 198.00 0.51 0.15 100.0 RNA5-8SN2-201 rRNA smooth muscle cell (In vitro differentiated cells)
ENST00000612463.1 ENST00000612463.1_1_25_+ 1–25 1021.00 2.65 0.76 100.0 RNA5-8SN2-201 rRNA smooth muscle cell (In vitro differentiated cells)