ENCFF222USQ

Library Details

Organism: Homo Sapiens
Biosample: smooth muscle cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR250STJ
Description: Part of ENCODE experiment ENCSR250STJ. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded SE101 length Hi-Seq reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000437139.7 ENST00000437139.7_1182_1238_+ 1182–1238 4004.00 12.54 2.98 46.97 TMEM107-204 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000437139.7 ENST00000437139.7_1209_1267_+ 1209–1267 3764.00 11.79 2.81 71.56 TMEM107-204 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000448136.6 ENST00000448136.6_1027_1095_+ 1027–1095 14028.00 69.79 10.46 91.56 SNHG16-201 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000448136.6 ENST00000448136.6_1026_1098_+ 1026–1098 3736.00 18.59 2.78 100.0 SNHG16-201 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000453082.5 ENST00000453082.5_267_347_+ 267–347 9.00 0.37 0.01 100.0 SNHG14-207 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000458770.1 ENST00000458770.1_7_74_+ 7–74 304155.00 94.54 226.70 96.62 SNORD105B-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000458838.1 ENST00000458838.1_8_75_+ 8–75 3529.00 56.64 2.63 71.7 SNORD121B-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000458892.1 ENST00000458892.1_5_39_+ 5–39 13.00 0.01 0.01 100.0 SNORD127-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000458892.1 ENST00000458892.1_5_80_+ 5–80 245670.00 97.14 183.11 99.4 SNORD127-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000458893.1 ENST00000458893.1_3_64_+ 3–64 102228.00 95.86 76.20 100.0 SNORD42B-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000459254.1 ENST00000459254.1_69_90_+ 69–90 1119.00 2.76 0.83 100.0 RNY4P25-201 misc RNA smooth muscle cell (In vitro differentiated cells)
ENST00000459386.1 ENST00000459386.1_9_73_+ 9–73 4924.00 75.19 3.67 100.0 SNORD121A-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 26627.00 82.40 19.85 94.92 SNORD126-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000459475.1 ENST00000459475.1_4_75_+ 4–75 4857.00 15.03 3.62 63.01 SNORD126-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000459577.1 ENST00000459577.1_12_91_+ 12–91 48654.00 96.11 36.26 98.34 SNORD124-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000461448.6 ENST00000461448.6_522_587_+ 522–587 391.00 7.13 0.29 100.0 SNHG12-201 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 6905.00 21.62 5.15 100.0 RPL3-212 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000467105.1 ENST00000467105.1_581_668_+ 581–668 9047.00 28.33 6.74 94.93 RPL3-212 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 20188.00 97.24 15.05 100.0 SMC1A-204 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000471759.5 ENST00000471759.5_372_449_+ 372–449 346818.00 91.25 258.50 98.1 RABGGTB-208 protein coding CDS not defined smooth muscle cell (In vitro differentiated cells)
ENST00000481456.1 ENST00000481456.1_825_898_+ 825–898 13355.00 57.31 9.95 87.99 DDX39B-219 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 679.00 2.91 0.51 100.0 DDX39B-219 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 1060.00 4.55 0.79 100.0 DDX39B-219 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000484599.1 ENST00000484599.1_580_645_+ 580–645 5939.00 74.29 4.43 100.0 RPS8-206 protein coding CDS not defined smooth muscle cell (In vitro differentiated cells)
ENST00000484610.5 ENST00000484610.5_392_433_+ 392–433 2119.00 0.34 1.58 100.0 RPL13-207 retained intron smooth muscle cell (In vitro differentiated cells)