ENCFF211GIU

Library Details

Organism: Homo Sapiens
Biosample: transverse colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR183YQY
Description: Part of ENCODE experiment ENCSR183YQY. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's transverse colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000251287.3 ENST00000251287.3_396_409_+ 396–409 221.00 25.34 1.08 100.0 HCN2-201 protein coding transverse colon (Tissue)
ENST00000261038.6 ENST00000261038.6_3100_3122_+ 3100–3122 2.00 7.41 0.01 100.0 SLC49A4-201 protein coding transverse colon (Tissue)
ENST00000284727.9 ENST00000284727.9_2255_2286_+ 2255–2286 206.00 40.16 1.01 100.0 ATP5MC3-201 protein coding transverse colon (Tissue)
ENST00000302506.8 ENST00000302506.8_1928_1942_+ 1928–1942 100.00 47.17 0.49 100.0 CDC25A-201 protein coding transverse colon (Tissue)
ENST00000308873.11 ENST00000308873.11_348_362_+ 348–362 891.00 48.03 4.35 100.0 RUNX3-201 protein coding transverse colon (Tissue)
ENST00000320776.5 ENST00000320776.5_289_301_+ 289–301 44061.00 75.49 215.17 100.0 BLOC1S4-201 protein coding transverse colon (Tissue)
ENST00000321990.5 ENST00000321990.5_6301_6324_+ 6301–6324 957.00 39.27 4.67 100.0 ATAD5-201 protein coding transverse colon (Tissue)
ENST00000325089.7 ENST00000325089.7_9_20_+ 9–20 84.00 1.41 0.41 100.0 SLITRK5-201 protein coding transverse colon (Tissue)
ENST00000325418.5 ENST00000325418.5_207_220_+ 207–220 701.00 59.41 3.42 100.0 HASPIN-201 protein coding transverse colon (Tissue)
ENST00000336854.9 ENST00000336854.9_1124_1136_+ 1124–1136 804.00 96.40 3.93 100.0 ATG101-201 protein coding transverse colon (Tissue)
ENST00000345127.9 ENST00000345127.9_4554_4567_+ 4554–4567 100.00 65.36 0.49 100.0 PRICKLE1-201 protein coding transverse colon (Tissue)
ENST00000347538.2 ENST00000347538.2_59_81_+ 59–81 1164.00 95.25 5.68 97.82 MIR133A2-201 miRNA transverse colon (Tissue)
ENST00000358769.7 ENST00000358769.7_52_66_+ 52–66 14.00 13.21 0.07 100.0 PBLD-204 protein coding transverse colon (Tissue)
ENST00000360737.4 ENST00000360737.4_3384_3405_+ 3384–3405 43598.00 79.72 212.91 97.2 MIRLET7BHG-201 lncRNA transverse colon (Tissue)
ENST00000360737.4 ENST00000360737.4_4323_4344_+ 4323–4344 6963.00 12.73 34.00 81.67 MIRLET7BHG-201 lncRNA transverse colon (Tissue)
ENST00000362103.4 ENST00000362103.4_40_58_+ 40–58 728.00 1.71 3.56 64.37 MIR375-201 miRNA transverse colon (Tissue)
ENST00000362103.4 ENST00000362103.4_40_61_+ 40–61 41685.00 97.65 203.57 99.52 MIR375-201 miRNA transverse colon (Tissue)
ENST00000362104.3 ENST00000362104.3_59_80_+ 59–80 940.00 19.78 4.59 100.0 MIR30E-201 miRNA transverse colon (Tissue)
ENST00000362104.3 ENST00000362104.3_17_40_+ 17–40 3506.00 73.76 17.12 100.0 MIR30E-201 miRNA transverse colon (Tissue)
ENST00000362111.4 ENST00000362111.4_42_63_+ 42–63 276.00 40.53 1.35 100.0 MIR29A-201 miRNA transverse colon (Tissue)
ENST00000362114.1 ENST00000362114.1_18_39_+ 18–39 169.00 90.86 0.83 100.0 MIR345-201 miRNA transverse colon (Tissue)
ENST00000362117.1 ENST00000362117.1_10_31_+ 10–31 6573.00 99.05 32.10 100.0 MIR16-2-201 miRNA transverse colon (Tissue)
ENST00000362125.3 ENST00000362125.3_58_80_+ 58–80 1.00 0.26 0.00 100.0 MIR340-201 miRNA transverse colon (Tissue)
ENST00000362125.3 ENST00000362125.3_16_37_+ 16–37 367.00 95.57 1.79 100.0 MIR340-201 miRNA transverse colon (Tissue)
ENST00000362127.2 ENST00000362127.2_50_71_+ 50–71 306.00 38.59 1.49 100.0 MIR107-201 miRNA transverse colon (Tissue)