ENCFF211GIU

Library Details

Organism: Homo Sapiens
Biosample: transverse colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR183YQY
Description: Part of ENCODE experiment ENCSR183YQY. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's transverse colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_13_32_+ 13–32 5262.00 0.09 25.70 57.98 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_1_52_+ 1–52 1725.00 0.03 8.42 94.37 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_10_32_+ 10–32 4993.00 0.09 24.38 72.39 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR17-8222238 tRNA-transcript-chr17-8222238_1_33_+ 1–33 30796.00 45.68 150.39 84.73 TRNA-TRANSCRIPT-CHR17-8222238 Asp tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR1-7930279 tRNA-transcript-chr1-7930279_1_33_+ 1–33 11978.00 94.22 58.49 100.0 TRNA-TRANSCRIPT-CHR1-7930279 Pseudo tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR19-45478602 tRNA-transcript-chr19-45478602_1_37_+ 1–37 2646.00 39.11 12.92 67.62 TRNA-TRANSCRIPT-CHR19-45478602 SeC(e) tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR20-45322361 tRNA-transcript-chr20-45322361_1_33_+ 1–33 2214.00 94.21 10.81 100.0 TRNA-TRANSCRIPT-CHR20-45322361 Pseudo tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_3_52_+ 3–52 94.00 0.02 0.46 94.95 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_1_52_+ 1–52 5.00 0.00 0.02 5.05 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_1_32_+ 1–32 449900.00 89.77 2197.08 97.63 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_28_+ 1–28 4500.00 3.90 21.98 45.33 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_33_+ 1–33 78298.59 67.82 382.37 80.84 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_35_+ 1–35 23848.58 20.66 116.46 24.85 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR2-203364408 tRNA-transcript-chr2-203364408_2_32_+ 2–32 796183.00 93.31 3888.15 96.48 TRNA-TRANSCRIPT-CHR2-203364408 Pseudo tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR3-104160680 tRNA-transcript-chr3-104160680_12_33_+ 12–33 1427.00 27.93 6.97 100.0 TRNA-TRANSCRIPT-CHR3-104160680 Pseudo tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR5-181188854 tRNA-transcript-chr5-181188854_1_32_+ 1–32 40500.00 47.04 197.78 70.75 TRNA-TRANSCRIPT-CHR5-181188854 Pro tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR5-181218270 tRNA-transcript-chr5-181218270_1_39_+ 1–39 126.00 0.01 0.62 100.0 TRNA-TRANSCRIPT-CHR5-181218270 Val tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR6-125780247 tRNA-transcript-chr6-125780247_1_42_+ 1–42 279.00 0.01 1.36 52.05 TRNA-TRANSCRIPT-CHR6-125780247 Glu tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR6-144216547 tRNA-transcript-chr6-144216547_1_50_+ 1–50 2244.00 20.56 10.96 100.0 TRNA-TRANSCRIPT-CHR6-144216547 Leu tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR6-26311196 tRNA-transcript-chr6-26311196_1_53_+ 1–53 73.00 1.21 0.36 100.0 TRNA-TRANSCRIPT-CHR6-26311196 Gln tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR6-26538054 tRNA-transcript-chr6-26538054_1_33_+ 1–33 1190704.00 94.28 5814.79 96.12 TRNA-TRANSCRIPT-CHR6-26538054 Val tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR6-27158127 tRNA-transcript-chr6-27158127_13_33_+ 13–33 453.00 0.05 2.21 100.0 TRNA-TRANSCRIPT-CHR6-27158127 His tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR6-27158127 tRNA-transcript-chr6-27158127_1_33_+ 1–33 778987.00 80.66 3804.17 93.68 TRNA-TRANSCRIPT-CHR6-27158127 His tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR6-27206088 tRNA-transcript-chr6-27206088_1_33_+ 1–33 455.00 38.56 2.22 100.0 TRNA-TRANSCRIPT-CHR6-27206088 Val tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR6-27215173 tRNA-transcript-chr6-27215173_1_19_+ 1–19 174.00 2.16 0.85 100.0 TRNA-TRANSCRIPT-CHR6-27215173 Arg tRNA transverse colon (Tissue)