ENCFF211GIU

Library Details

Organism: Homo Sapiens
Biosample: transverse colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR183YQY
Description: Part of ENCODE experiment ENCSR183YQY. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's transverse colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000496055.5 ENST00000496055.5_493_553_+ 493–553 444.00 2.88 2.17 100.0 RABGGTB-213 protein coding CDS not defined transverse colon (Tissue)
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 20.00 0.13 0.10 25.64 RABGGTB-213 protein coding CDS not defined transverse colon (Tissue)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 9260.00 60.09 45.22 96.04 RABGGTB-213 protein coding CDS not defined transverse colon (Tissue)
ENST00000496055.5 ENST00000496055.5_471_515_+ 471–515 58.00 0.38 0.28 74.36 RABGGTB-213 protein coding CDS not defined transverse colon (Tissue)
ENST00000496055.5 ENST00000496055.5_505_553_+ 505–553 188.00 1.22 0.92 100.0 RABGGTB-213 protein coding CDS not defined transverse colon (Tissue)
ENST00000496254.5 ENST00000496254.5_774_811_+ 774–811 204.00 8.41 1.00 100.0 GNL3-211 retained intron transverse colon (Tissue)
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 1910.00 78.70 9.33 100.0 GNL3-211 retained intron transverse colon (Tissue)
ENST00000497519.1 ENST00000497519.1_681_708_+ 681–708 153.00 9.76 0.75 100.0 RPL5-205 retained intron transverse colon (Tissue)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 193.00 12.31 0.94 100.0 RPL5-205 retained intron transverse colon (Tissue)
ENST00000499525.1 ENST00000499525.1_506_558_+ 506–558 27.00 0.42 0.13 100.0 ZBED9-AS1-201 lncRNA transverse colon (Tissue)
ENST00000507485.1 ENST00000507485.1_1149_1210_+ 1149–1210 853.00 75.35 4.17 100.0 RPS3A-206 retained intron transverse colon (Tissue)
ENST00000509578.1 ENST00000509578.1_1330_1389_+ 1330–1389 9621.00 98.30 46.98 100.0 COX7C-203 protein coding transverse colon (Tissue)
ENST00000513027.3 ENST00000513027.3_241_306_+ 241–306 3523.83 45.79 17.21 66.2 RACK1-229 protein coding transverse colon (Tissue)
ENST00000513027.3 ENST00000513027.3_272_305_+ 272–305 1054.00 13.70 5.15 97.86 RACK1-229 protein coding transverse colon (Tissue)
ENST00000513027.3 ENST00000513027.3_263_305_+ 263–305 265.00 3.44 1.29 100.0 RACK1-229 protein coding transverse colon (Tissue)
ENST00000513027.3 ENST00000513027.3_241_308_+ 241–308 1939.84 25.21 9.47 43.17 RACK1-229 protein coding transverse colon (Tissue)
ENST00000513060.5 ENST00000513060.5_713_786_+ 713–786 11868.00 44.13 57.96 71.26 RACK1-230 retained intron transverse colon (Tissue)
ENST00000513060.5 ENST00000513060.5_712_783_+ 712–783 13861.00 51.54 67.69 84.74 RACK1-230 retained intron transverse colon (Tissue)
ENST00000515961.1 ENST00000515961.1_38_58_+ 38–58 40.00 1.83 0.20 100.0 RNA5SP486-201 rRNA pseudogene transverse colon (Tissue)
ENST00000516201.1 ENST00000516201.1_1_30_+ 1–30 1185.00 80.94 5.79 100.0 SCARNA5-201 scaRNA transverse colon (Tissue)
ENST00000516507.1 ENST00000516507.1_67_93_+ 67–93 10924.00 5.00 53.35 57.41 RNY4-201 misc RNA transverse colon (Tissue)
ENST00000516507.1 ENST00000516507.1_41_93_+ 41–93 101.00 0.05 0.49 100.0 RNY4-201 misc RNA transverse colon (Tissue)
ENST00000516507.1 ENST00000516507.1_1_36_+ 1–36 23204.00 10.62 113.32 86.77 RNY4-201 misc RNA transverse colon (Tissue)
ENST00000516507.1 ENST00000516507.1_1_48_+ 1–48 625.00 0.29 3.05 100.0 RNY4-201 misc RNA transverse colon (Tissue)
ENST00000516507.1 ENST00000516507.1_54_93_+ 54–93 99.00 0.05 0.48 38.08 RNY4-201 misc RNA transverse colon (Tissue)