ENCFF211GIU

Library Details

Organism: Homo Sapiens
Biosample: transverse colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR183YQY
Description: Part of ENCODE experiment ENCSR183YQY. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's transverse colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000485706.5 ENST00000485706.5_486_524_+ 486–524 107.00 11.00 0.52 100.0 RPL7A-206 protein coding CDS not defined transverse colon (Tissue)
ENST00000485706.5 ENST00000485706.5_456_524_+ 456–524 125.00 12.85 0.61 100.0 RPL7A-206 protein coding CDS not defined transverse colon (Tissue)
ENST00000485756.1 ENST00000485756.1_138_189_+ 138–189 204.00 0.16 1.00 100.0 RPL21-209 retained intron transverse colon (Tissue)
ENST00000485756.1 ENST00000485756.1_122_192_+ 122–192 43680.00 33.78 213.31 99.5 RPL21-209 retained intron transverse colon (Tissue)
ENST00000485756.1 ENST00000485756.1_123_168_+ 123–168 1189.00 0.92 5.81 100.0 RPL21-209 retained intron transverse colon (Tissue)
ENST00000485756.1 ENST00000485756.1_123_189_+ 123–189 79502.00 61.49 388.25 95.66 RPL21-209 retained intron transverse colon (Tissue)
ENST00000485756.1 ENST00000485756.1_173_189_+ 173–189 4.00 0.00 0.02 100.0 RPL21-209 retained intron transverse colon (Tissue)
ENST00000486255.1 ENST00000486255.1_1073_1096_+ 1073–1096 22.00 25.00 0.11 100.0 GABRE-209 retained intron transverse colon (Tissue)
ENST00000488946.1 ENST00000488946.1_844_886_+ 844–886 1234.00 8.36 6.03 100.0 RPL13A-212 retained intron transverse colon (Tissue)
ENST00000488946.1 ENST00000488946.1_1364_1441_+ 1364–1441 15.00 0.10 0.07 53.57 RPL13A-212 retained intron transverse colon (Tissue)
ENST00000488946.1 ENST00000488946.1_155_235_+ 155–235 6146.00 41.62 30.01 99.71 RPL13A-212 retained intron transverse colon (Tissue)
ENST00000488946.1 ENST00000488946.1_804_886_+ 804–886 1926.00 13.04 9.41 86.56 RPL13A-212 retained intron transverse colon (Tissue)
ENST00000488946.1 ENST00000488946.1_1363_1444_+ 1363–1444 39.00 0.26 0.19 100.0 RPL13A-212 retained intron transverse colon (Tissue)
ENST00000488946.1 ENST00000488946.1_1095_1159_+ 1095–1159 66.00 0.45 0.32 100.0 RPL13A-212 retained intron transverse colon (Tissue)
ENST00000488946.1 ENST00000488946.1_197_235_+ 197–235 55.00 0.37 0.27 100.0 RPL13A-212 retained intron transverse colon (Tissue)
ENST00000489392.1 ENST00000489392.1_116_191_+ 116–191 1797.00 49.53 8.78 68.33 RPL7A-207 protein coding CDS not defined transverse colon (Tissue)
ENST00000489392.1 ENST00000489392.1_151_191_+ 151–191 81.00 2.23 0.40 100.0 RPL7A-207 protein coding CDS not defined transverse colon (Tissue)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 111.00 3.06 0.54 100.0 RPL7A-207 protein coding CDS not defined transverse colon (Tissue)
ENST00000490232.3 ENST00000490232.3_219_300_+ 219–300 62.00 0.14 0.30 100.0 RN7SL2-201 misc RNA transverse colon (Tissue)
ENST00000490232.3 ENST00000490232.3_229_300_+ 229–300 1130.00 2.58 5.52 53.43 RN7SL2-201 misc RNA transverse colon (Tissue)
ENST00000493449.5 ENST00000493449.5_96_109_+ 96–109 227.00 85.34 1.11 100.0 RGS11-208 retained intron transverse colon (Tissue)
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 969.00 7.33 4.73 81.5 NOP56-217 protein coding CDS not defined transverse colon (Tissue)
ENST00000494697.5 ENST00000494697.5_274_348_+ 274–348 9991.00 75.59 48.79 87.17 NOP56-217 protein coding CDS not defined transverse colon (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 800.00 5.19 3.91 83.42 RABGGTB-213 protein coding CDS not defined transverse colon (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 246.00 1.60 1.20 100.0 RABGGTB-213 protein coding CDS not defined transverse colon (Tissue)