ENCFF195CBI

Library Details

Organism: Homo Sapiens
Biosample: testis (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR626GVP
Description: Part of ENCODE experiment ENCSR626GVP. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's testis tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000685307.3 ENST00000685307.3_1198_1226_+ 1198–1226 366.00 18.80 1.82 100.0 SNHG10-212 lncRNA testis (Tissue)
ENST00000688264.3 ENST00000688264.3_548_571_+ 548–571 376.00 78.33 1.87 100.0 MIR222HG-206 lncRNA testis (Tissue)
ENST00000688264.3 ENST00000688264.3_1402_1424_+ 1402–1424 45.00 9.38 0.22 77.59 MIR222HG-206 lncRNA testis (Tissue)
ENST00000688264.3 ENST00000688264.3_1362_1387_+ 1362–1387 1.00 0.21 0.00 100.0 MIR222HG-206 lncRNA testis (Tissue)
ENST00000697734.1 ENST00000697734.1_1838_1871_+ 1838–1871 464.00 50.38 2.31 100.0 RPSA-216 retained intron testis (Tissue)
ENST00000697879.1 ENST00000697879.1_547_564_+ 547–564 1098.00 2.85 5.47 75.26 MIR99AHG-370 lncRNA testis (Tissue)
ENST00000697879.1 ENST00000697879.1_547_568_+ 547–568 35889.00 93.08 178.76 97.86 MIR99AHG-370 lncRNA testis (Tissue)
ENST00000699245.1 ENST00000699245.1_739_776_+ 739–776 600.00 94.94 2.99 100.0 HPS4-237 retained intron testis (Tissue)
ENST00000699458.1 ENST00000699458.1_1475_1492_+ 1475–1492 191.00 81.97 0.95 100.0 MEG8-253 lncRNA testis (Tissue)
ENST00000699460.1 ENST00000699460.1_1623_1644_+ 1623–1644 2.00 0.20 0.01 100.0 MEG9-206 lncRNA testis (Tissue)
ENST00000699460.1 ENST00000699460.1_1872_1893_+ 1872–1893 18.00 1.84 0.09 100.0 MEG9-206 lncRNA testis (Tissue)
ENST00000699460.1 ENST00000699460.1_2148_2169_+ 2148–2169 350.00 35.86 1.74 100.0 MEG9-206 lncRNA testis (Tissue)
ENST00000703637.1 ENST00000703637.1_459_481_+ 459–481 621.00 8.73 3.09 100.0 DNAJC5-203 nonsense mediated decay testis (Tissue)
ENST00000707189.1 ENST00000707189.1_1316_1333_+ 1316–1333 631.00 20.39 3.14 100.0 ENST00000707189 TEC testis (Tissue)
ENST00000710424.1 ENST00000710424.1_2162_2183_+ 2162–2183 14548.30 22.61 72.46 24.8 MIR17HG-214 lncRNA testis (Tissue)
ENST00000710424.1 ENST00000710424.1_1740_1762_+ 1740–1762 13.00 0.02 0.06 100.0 MIR17HG-214 lncRNA testis (Tissue)
ENST00000710424.1 ENST00000710424.1_2162_2185_+ 2162–2185 46278.01 71.93 230.51 74.1 MIR17HG-214 lncRNA testis (Tissue)
ENST00000710424.1 ENST00000710424.1_2046_2067_+ 2046–2067 121.00 0.19 0.60 100.0 MIR17HG-214 lncRNA testis (Tissue)
ENST00000710424.1 ENST00000710424.1_2069_2124_+ 2069–2124 118.00 0.18 0.59 100.0 MIR17HG-214 lncRNA testis (Tissue)
ENST00000710424.1 ENST00000710424.1_1873_1895_+ 1873–1895 17.00 0.03 0.08 100.0 MIR17HG-214 lncRNA testis (Tissue)
ENST00000710424.1 ENST00000710424.1_1419_1441_+ 1419–1441 26.00 0.04 0.13 100.0 MIR17HG-214 lncRNA testis (Tissue)
ENST00000718227.1 ENST00000718227.1_356_384_+ 356–384 4282.00 2.71 21.33 100.0 SNHG32-223 lncRNA testis (Tissue)
ENST00000718227.1 ENST00000718227.1_387_419_+ 387–419 123.00 0.08 0.61 100.0 SNHG32-223 lncRNA testis (Tissue)
ENST00000718227.1 ENST00000718227.1_359_419_+ 359–419 73.00 0.05 0.36 100.0 SNHG32-223 lncRNA testis (Tissue)
ENST00000718227.1 ENST00000718227.1_352_421_+ 352–421 2986.00 1.89 14.87 70.71 SNHG32-223 lncRNA testis (Tissue)