ENCFF195CBI

Library Details

Organism: Homo Sapiens
Biosample: testis (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR626GVP
Description: Part of ENCODE experiment ENCSR626GVP. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's testis tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 65.00 2.81 0.32 100.0 VMP1-217 retained intron testis (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 1484.00 64.21 7.39 71.62 VMP1-217 retained intron testis (Tissue)
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 859.00 24.51 4.28 100.0 C19orf48P-203 retained intron testis (Tissue)
ENST00000595794.5 ENST00000595794.5_236_276_+ 236–276 105.00 3.00 0.52 100.0 C19orf48P-203 retained intron testis (Tissue)
ENST00000597420.2 ENST00000597420.2_241_263_+ 241–263 11.00 84.62 0.05 100.0 ENST00000597420 lncRNA testis (Tissue)
ENST00000602315.3 ENST00000602315.3_752_771_+ 752–771 158159.00 76.36 787.78 78.09 CARMN-209 lncRNA testis (Tissue)
ENST00000604535.1 ENST00000604535.1_1396_1410_+ 1396–1410 209.00 28.24 1.04 100.0 PPFIA1P1-201 processed pseudogene testis (Tissue)
ENST00000606412.1 ENST00000606412.1_4_67_+ 4–67 2926.00 38.32 14.57 100.0 SNORD114-21-201 snoRNA testis (Tissue)
ENST00000606412.1 ENST00000606412.1_35_67_+ 35–67 3517.00 46.06 17.52 100.0 SNORD114-21-201 snoRNA testis (Tissue)
ENST00000606724.1 ENST00000606724.1_22_43_+ 22–43 1136.00 96.19 5.66 100.0 MIR98-201 miRNA testis (Tissue)
ENST00000607261.1 ENST00000607261.1_3_73_+ 3–73 422.00 39.18 2.10 100.0 SNORD113-5-201 snoRNA testis (Tissue)
ENST00000607334.3 ENST00000607334.3_14_34_+ 14–34 19.00 76.00 0.09 100.0 MIR15A-201 miRNA testis (Tissue)
ENST00000607441.3 ENST00000607441.3_43_63_+ 43–63 6.00 100.00 0.03 100.0 MIR376C-201 miRNA testis (Tissue)
ENST00000607520.2 ENST00000607520.2_5465_5487_+ 5465–5487 349.00 52.80 1.74 100.0 SNHG21-206 retained intron testis (Tissue)
ENST00000612171.2 ENST00000612171.2_4_25_+ 4–25 6934.00 48.26 34.54 98.27 MIR486-1-201 miRNA testis (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1597_+ 1528–1597 48910.00 78.10 243.62 99.94 NOP56-219 retained intron testis (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1583_+ 1528–1583 412.00 0.66 2.05 100.0 NOP56-219 retained intron testis (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1555_+ 1528–1555 403.00 0.64 2.01 100.0 NOP56-219 retained intron testis (Tissue)
ENST00000612233.1 ENST00000612233.1_1212_1282_+ 1212–1282 4452.00 7.11 22.18 43.77 NOP56-219 retained intron testis (Tissue)
ENST00000612463.1 ENST00000612463.1_81_123_+ 81–123 5465.33 27.33 27.22 39.42 RNA5-8SN2-201 rRNA testis (Tissue)
ENST00000612463.1 ENST00000612463.1_1_50_+ 1–50 23.00 0.12 0.11 100.0 RNA5-8SN2-201 rRNA testis (Tissue)
ENST00000612463.1 ENST00000612463.1_1_25_+ 1–25 391.00 1.96 1.95 100.0 RNA5-8SN2-201 rRNA testis (Tissue)
ENST00000612463.1 ENST00000612463.1_10_37_+ 10–37 19.00 0.10 0.09 100.0 RNA5-8SN2-201 rRNA testis (Tissue)
ENST00000612463.1 ENST00000612463.1_83_123_+ 83–123 7908.07 39.54 39.39 57.03 RNA5-8SN2-201 rRNA testis (Tissue)
ENST00000615835.1 ENST00000615835.1_56_79_+ 56–79 6.00 100.00 0.03 100.0 MIR7974-201 miRNA testis (Tissue)