ENCFF195CBI

Library Details

Organism: Homo Sapiens
Biosample: testis (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR626GVP
Description: Part of ENCODE experiment ENCSR626GVP. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's testis tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000496055.5 ENST00000496055.5_471_515_+ 471–515 403.00 1.81 2.01 61.72 RABGGTB-213 protein coding CDS not defined testis (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 474.00 2.12 2.36 100.0 RABGGTB-213 protein coding CDS not defined testis (Tissue)
ENST00000496055.5 ENST00000496055.5_493_553_+ 493–553 1021.00 4.57 5.09 100.0 RABGGTB-213 protein coding CDS not defined testis (Tissue)
ENST00000496254.5 ENST00000496254.5_774_811_+ 774–811 488.00 13.40 2.43 100.0 GNL3-211 retained intron testis (Tissue)
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 2808.00 77.12 13.99 100.0 GNL3-211 retained intron testis (Tissue)
ENST00000497519.1 ENST00000497519.1_681_708_+ 681–708 329.00 41.02 1.64 100.0 RPL5-205 retained intron testis (Tissue)
ENST00000499525.1 ENST00000499525.1_506_558_+ 506–558 64.00 2.68 0.32 100.0 ZBED9-AS1-201 lncRNA testis (Tissue)
ENST00000507485.1 ENST00000507485.1_1149_1210_+ 1149–1210 2156.00 92.77 10.74 100.0 RPS3A-206 retained intron testis (Tissue)
ENST00000509578.1 ENST00000509578.1_1330_1389_+ 1330–1389 5873.00 97.64 29.25 100.0 COX7C-203 protein coding testis (Tissue)
ENST00000513027.3 ENST00000513027.3_263_305_+ 263–305 4795.00 11.33 23.88 100.0 RACK1-229 protein coding testis (Tissue)
ENST00000513027.3 ENST00000513027.3_272_305_+ 272–305 9379.00 22.16 46.72 99.77 RACK1-229 protein coding testis (Tissue)
ENST00000513027.3 ENST00000513027.3_241_308_+ 241–308 5041.75 11.91 25.11 33.56 RACK1-229 protein coding testis (Tissue)
ENST00000513027.3 ENST00000513027.3_241_306_+ 241–306 19725.86 46.60 98.25 82.14 RACK1-229 protein coding testis (Tissue)
ENST00000513060.5 ENST00000513060.5_712_783_+ 712–783 278.00 13.04 1.38 100.0 RACK1-230 retained intron testis (Tissue)
ENST00000515961.1 ENST00000515961.1_38_58_+ 38–58 57.00 2.43 0.28 100.0 RNA5SP486-201 rRNA pseudogene testis (Tissue)
ENST00000516201.1 ENST00000516201.1_1_30_+ 1–30 1811.00 84.71 9.02 100.0 SCARNA5-201 scaRNA testis (Tissue)
ENST00000516507.1 ENST00000516507.1_1_32_+ 1–32 11229.00 25.02 55.93 98.86 RNY4-201 misc RNA testis (Tissue)
ENST00000516507.1 ENST00000516507.1_48_93_+ 48–93 28138.00 62.70 140.15 99.94 RNY4-201 misc RNA testis (Tissue)
ENST00000516507.1 ENST00000516507.1_1_17_+ 1–17 537.00 1.20 2.67 100.0 RNY4-201 misc RNA testis (Tissue)
ENST00000516507.1 ENST00000516507.1_1_39_+ 1–39 61.00 0.14 0.30 62.89 RNY4-201 misc RNA testis (Tissue)
ENST00000516507.1 ENST00000516507.1_67_93_+ 67–93 791.00 1.76 3.94 36.18 RNY4-201 misc RNA testis (Tissue)
ENST00000516507.1 ENST00000516507.1_41_93_+ 41–93 17.00 0.04 0.08 100.0 RNY4-201 misc RNA testis (Tissue)
ENST00000516507.1 ENST00000516507.1_1_36_+ 1–36 567.00 1.26 2.82 81.47 RNY4-201 misc RNA testis (Tissue)
ENST00000516507.1 ENST00000516507.1_1_48_+ 1–48 66.00 0.15 0.33 100.0 RNY4-201 misc RNA testis (Tissue)
ENST00000516507.1 ENST00000516507.1_54_93_+ 54–93 9.00 0.02 0.04 47.37 RNY4-201 misc RNA testis (Tissue)