ENCFF193XIP

Library Details

Organism: Homo Sapiens
Biosample: neural progenitor cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR828LSC
Description: Part of ENCODE experiment ENCSR828LSC. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a neuronal pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000365423.1 ENST00000365423.1_4_67_+ 4–67 1112.00 40.04 0.92 77.98 SNORD114-22-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000365423.1 ENST00000365423.1_35_67_+ 35–67 958.00 34.50 0.79 100.0 SNORD114-22-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000365444.1 ENST00000365444.1_3_69_+ 3–69 71515.00 93.80 58.98 100.0 SNORD6-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000365444.1 ENST00000365444.1_30_69_+ 30–69 189.00 0.25 0.16 100.0 SNORD6-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000365484.1 ENST00000365484.1_1_95_+ 1–95 1215.00 26.90 1.00 100.0 RNY3-201 misc RNA neural progenitor cell (In vitro differentiated cells)
ENST00000365530.1 ENST00000365530.1_3_39_+ 3–39 2512.00 17.19 2.07 100.0 SNORD82-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000365530.1 ENST00000365530.1_3_48_+ 3–48 1763.30 12.07 1.45 42.33 SNORD82-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000365530.1 ENST00000365530.1_3_29_+ 3–29 259.00 1.77 0.21 100.0 SNORD82-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000365530.1 ENST00000365530.1_37_67_+ 37–67 605.00 4.14 0.50 100.0 SNORD82-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000365530.1 ENST00000365530.1_30_67_+ 30–67 685.00 4.69 0.56 73.58 SNORD82-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000365530.1 ENST00000365530.1_4_67_+ 4–67 2838.00 19.42 2.34 86.66 SNORD82-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000365530.1 ENST00000365530.1_3_46_+ 3–46 2486.06 17.01 2.05 59.68 SNORD82-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000365699.4 ENST00000365699.4_9_32_+ 9–32 1791.00 96.81 1.48 98.3 MIR146B-201 miRNA neural progenitor cell (In vitro differentiated cells)
ENST00000366365.3 ENST00000366365.3_327_364_+ 327–364 5.00 5.21 0.00 100.0 SNHG20-201 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000369825.6 ENST00000369825.6_444_466_+ 444–466 79.00 25.65 0.07 100.0 ATP5MK-205 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000377186.4 ENST00000377186.4_697_717_+ 697–717 32.00 10.70 0.03 100.0 LINC01556-201 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000378755.9 ENST00000378755.9_1289_1300_+ 1289–1300 175.00 43.10 0.14 100.0 ATAD3A-202 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000381414.8 ENST00000381414.8_4377_4392_+ 4377–4392 228.00 38.84 0.19 62.64 TMC5-202 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000382874.6 ENST00000382874.6_779_809_+ 779–809 3547.00 96.57 2.93 100.0 ZMYM2-203 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000383858.1 ENST00000383858.1_151_164_+ 151–164 244.00 2.65 0.20 100.0 RNVU1-7-201 snRNA neural progenitor cell (In vitro differentiated cells)
ENST00000383884.1 ENST00000383884.1_1_75_+ 1–75 20200.00 95.82 16.66 100.0 SNORD24-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000383924.1 ENST00000383924.1_85_107_+ 85–107 1697.00 93.50 1.40 100.0 Y_RNA.389-201 misc RNA neural progenitor cell (In vitro differentiated cells)
ENST00000384027.1 ENST00000384027.1_3_70_+ 3–70 94122.00 85.03 77.63 98.3 SNORD101-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000384027.1 ENST00000384027.1_30_70_+ 30–70 96.00 0.09 0.08 100.0 SNORD101-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000384027.1 ENST00000384027.1_42_70_+ 42–70 95.00 0.09 0.08 100.0 SNORD101-201 snoRNA neural progenitor cell (In vitro differentiated cells)