ENCFF193XIP

Library Details

Organism: Homo Sapiens
Biosample: neural progenitor cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR828LSC
Description: Part of ENCODE experiment ENCSR828LSC. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a neuronal pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362973.1 ENST00000362973.1_96_117_+ 96–117 13284.00 63.98 10.96 90.03 RNA5SP358-201 rRNA pseudogene neural progenitor cell (In vitro differentiated cells)
ENST00000363124.1 ENST00000363124.1_17_32_+ 17–32 818.00 22.11 0.67 78.28 RNA5SP145-201 rRNA pseudogene neural progenitor cell (In vitro differentiated cells)
ENST00000363182.1 ENST00000363182.1_1_32_+ 1–32 33.00 21.29 0.03 100.0 Y_RNA.105-201 misc RNA neural progenitor cell (In vitro differentiated cells)
ENST00000363194.1 ENST00000363194.1_1_32_+ 1–32 914.00 62.35 0.75 100.0 RNY4P9-201 misc RNA neural progenitor cell (In vitro differentiated cells)
ENST00000363286.1 ENST00000363286.1_63_116_+ 63–116 222.00 3.70 0.18 100.0 RNU5B-1-201 snRNA neural progenitor cell (In vitro differentiated cells)
ENST00000363286.1 ENST00000363286.1_68_116_+ 68–116 18.00 0.30 0.01 100.0 RNU5B-1-201 snRNA neural progenitor cell (In vitro differentiated cells)
ENST00000363286.1 ENST00000363286.1_1_78_+ 1–78 693.00 11.54 0.57 58.98 RNU5B-1-201 snRNA neural progenitor cell (In vitro differentiated cells)
ENST00000363286.1 ENST00000363286.1_1_69_+ 1–69 83.00 1.38 0.07 100.0 RNU5B-1-201 snRNA neural progenitor cell (In vitro differentiated cells)
ENST00000363286.1 ENST00000363286.1_1_86_+ 1–86 85.00 1.42 0.07 100.0 RNU5B-1-201 snRNA neural progenitor cell (In vitro differentiated cells)
ENST00000363286.1 ENST00000363286.1_55_116_+ 55–116 1093.00 18.20 0.90 100.0 RNU5B-1-201 snRNA neural progenitor cell (In vitro differentiated cells)
ENST00000363293.1 ENST00000363293.1_2_82_+ 2–82 2086.00 98.44 1.72 99.71 SNORD115-18-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000363341.1 ENST00000363341.1_1_36_+ 1–36 59.00 5.66 0.05 70.24 RNY4P27-201 misc RNA neural progenitor cell (In vitro differentiated cells)
ENST00000363341.1 ENST00000363341.1_1_32_+ 1–32 502.00 48.13 0.41 95.26 RNY4P27-201 misc RNA neural progenitor cell (In vitro differentiated cells)
ENST00000363444.1 ENST00000363444.1_74_99_+ 74–99 570.00 27.87 0.47 100.0 Y_RNA.136-201 misc RNA neural progenitor cell (In vitro differentiated cells)
ENST00000363608.1 ENST00000363608.1_2_82_+ 2–82 356.00 88.78 0.29 100.0 SNORD115-41-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000363633.1 ENST00000363633.1_2_82_+ 2–82 33.00 40.74 0.03 100.0 SNORD115-5-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000363723.1 ENST00000363723.1_2_82_+ 2–82 42.00 71.19 0.03 100.0 SNORD115-33-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000363742.1 ENST00000363742.1_4_67_+ 4–67 571.00 58.81 0.47 81.81 SNORD114-25-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000363762.1 ENST00000363762.1_3_72_+ 3–72 611.00 83.47 0.50 100.0 SNORD113-7-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000363856.1 ENST00000363856.1_2_82_+ 2–82 94.00 61.44 0.08 100.0 SNORD115-8-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000363872.1 ENST00000363872.1_74_98_+ 74–98 294.00 49.25 0.24 100.0 Y_RNA.181-201 misc RNA neural progenitor cell (In vitro differentiated cells)
ENST00000363887.1 ENST00000363887.1_2_82_+ 2–82 92.00 71.32 0.08 100.0 SNORD115-16-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000364079.1 ENST00000364079.1_2_82_+ 2–82 59.00 64.84 0.05 100.0 SNORD115-32-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000364117.1 ENST00000364117.1_2_82_+ 2–82 47.00 72.31 0.04 100.0 SNORD115-30-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000364228.1 ENST00000364228.1_1_63_+ 1–63 298.00 1.14 0.25 100.0 RNY1-201 misc RNA neural progenitor cell (In vitro differentiated cells)