ENCFF193XIP

Library Details

Organism: Homo Sapiens
Biosample: neural progenitor cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR828LSC
Description: Part of ENCODE experiment ENCSR828LSC. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a neuronal pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000515961.1 ENST00000515961.1_38_58_+ 38–58 37.00 1.28 0.03 100.0 RNA5SP486-201 rRNA pseudogene neural progenitor cell (In vitro differentiated cells)
ENST00000516201.1 ENST00000516201.1_1_30_+ 1–30 655.00 91.61 0.54 100.0 SCARNA5-201 scaRNA neural progenitor cell (In vitro differentiated cells)
ENST00000516507.1 ENST00000516507.1_1_48_+ 1–48 36.00 0.03 0.03 100.0 RNY4-201 misc RNA neural progenitor cell (In vitro differentiated cells)
ENST00000516507.1 ENST00000516507.1_41_93_+ 41–93 154.00 0.14 0.13 100.0 RNY4-201 misc RNA neural progenitor cell (In vitro differentiated cells)
ENST00000516507.1 ENST00000516507.1_54_93_+ 54–93 306.00 0.29 0.25 76.31 RNY4-201 misc RNA neural progenitor cell (In vitro differentiated cells)
ENST00000516507.1 ENST00000516507.1_15_32_+ 15–32 39.00 0.04 0.03 100.0 RNY4-201 misc RNA neural progenitor cell (In vitro differentiated cells)
ENST00000516507.1 ENST00000516507.1_67_93_+ 67–93 2311.00 2.16 1.91 95.02 RNY4-201 misc RNA neural progenitor cell (In vitro differentiated cells)
ENST00000516507.1 ENST00000516507.1_1_36_+ 1–36 7617.00 7.13 6.28 80.29 RNY4-201 misc RNA neural progenitor cell (In vitro differentiated cells)
ENST00000516507.1 ENST00000516507.1_1_26_+ 1–26 25.00 0.02 0.02 100.0 RNY4-201 misc RNA neural progenitor cell (In vitro differentiated cells)
ENST00000516507.1 ENST00000516507.1_1_32_+ 1–32 44917.00 42.05 37.05 96.0 RNY4-201 misc RNA neural progenitor cell (In vitro differentiated cells)
ENST00000516507.1 ENST00000516507.1_48_93_+ 48–93 2152.00 2.01 1.77 95.9 RNY4-201 misc RNA neural progenitor cell (In vitro differentiated cells)
ENST00000516507.1 ENST00000516507.1_1_17_+ 1–17 47.00 0.04 0.04 100.0 RNY4-201 misc RNA neural progenitor cell (In vitro differentiated cells)
ENST00000516507.1 ENST00000516507.1_1_39_+ 1–39 517.00 0.48 0.43 21.71 RNY4-201 misc RNA neural progenitor cell (In vitro differentiated cells)
ENST00000516507.1 ENST00000516507.1_1_90_+ 1–90 38615.00 36.15 31.85 100.0 RNY4-201 misc RNA neural progenitor cell (In vitro differentiated cells)
ENST00000517927.2 ENST00000517927.2_384_405_+ 384–405 23.00 85.19 0.02 88.46 MIR3142HG-201 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000521127.2 ENST00000521127.2_334_410_+ 334–410 15816.00 72.34 13.04 100.0 SNHG6-204 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000521276.3 ENST00000521276.3_11_31_+ 11–31 5577.00 28.95 4.60 100.0 MIR151A-201 miRNA neural progenitor cell (In vitro differentiated cells)
ENST00000521276.3 ENST00000521276.3_47_68_+ 47–68 11300.00 58.66 9.32 85.23 MIR151A-201 miRNA neural progenitor cell (In vitro differentiated cells)
ENST00000523308.5 ENST00000523308.5_614_626_+ 614–626 3879.00 82.67 3.20 100.0 DENND3-221 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000525239.5 ENST00000525239.5_78_116_+ 78–116 222.00 0.02 0.18 100.0 WDR74-204 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000525239.5 ENST00000525239.5_93_116_+ 93–116 338.00 0.03 0.28 77.7 WDR74-204 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000525239.5 ENST00000525239.5_50_116_+ 50–116 97.00 0.01 0.08 100.0 WDR74-204 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000525239.5 ENST00000525239.5_90_116_+ 90–116 148.00 0.02 0.12 66.37 WDR74-204 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000525239.5 ENST00000525239.5_93_187_+ 93–187 1917.00 0.20 1.58 78.28 WDR74-204 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000525239.5 ENST00000525239.5_88_116_+ 88–116 75.00 0.01 0.06 33.63 WDR74-204 protein coding neural progenitor cell (In vitro differentiated cells)