ENCFF193XIP

Library Details

Organism: Homo Sapiens
Biosample: neural progenitor cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR828LSC
Description: Part of ENCODE experiment ENCSR828LSC. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a neuronal pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 17001.00 42.85 14.02 73.02 SNORD126-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000459577.1 ENST00000459577.1_12_91_+ 12–91 15668.00 82.07 12.92 85.1 SNORD124-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000461448.6 ENST00000461448.6_522_587_+ 522–587 104.00 6.90 0.09 100.0 SNHG12-201 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 2041.00 10.24 1.68 100.0 RPL3-212 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000467105.1 ENST00000467105.1_581_668_+ 581–668 11324.00 56.79 9.34 93.82 RPL3-212 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 5575.00 96.79 4.60 100.0 SMC1A-204 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000471759.5 ENST00000471759.5_372_449_+ 372–449 290270.00 97.41 239.40 99.32 RABGGTB-208 protein coding CDS not defined neural progenitor cell (In vitro differentiated cells)
ENST00000481456.1 ENST00000481456.1_825_898_+ 825–898 1120.00 24.77 0.92 90.91 DDX39B-219 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 311.00 6.88 0.26 100.0 DDX39B-219 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 112.00 2.48 0.09 100.0 DDX39B-219 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000484599.1 ENST00000484599.1_580_645_+ 580–645 8607.00 88.48 7.10 100.0 RPS8-206 protein coding CDS not defined neural progenitor cell (In vitro differentiated cells)
ENST00000484610.5 ENST00000484610.5_392_433_+ 392–433 942.00 0.09 0.78 100.0 RPL13-207 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000484610.5 ENST00000484610.5_361_433_+ 361–433 984556.00 98.76 812.03 99.96 RPL13-207 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_343_390_+ 343–390 4132.00 0.34 3.41 80.97 EIF4A2-219 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_343_408_+ 343–408 524447.00 42.71 432.54 83.39 EIF4A2-219 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_343_413_+ 343–413 1829.00 0.15 1.51 100.0 EIF4A2-219 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_343_405_+ 343–405 640158.00 52.14 527.98 97.92 EIF4A2-219 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_343_418_+ 343–418 10577.00 0.86 8.72 100.0 EIF4A2-219 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_365_408_+ 365–408 1918.00 0.16 1.58 52.5 EIF4A2-219 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_343_434_+ 343–434 11702.00 0.95 9.65 100.0 EIF4A2-219 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_2108_2152_+ 2108–2152 16.00 0.00 0.01 100.0 EIF4A2-219 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_365_405_+ 365–405 6227.00 0.51 5.14 92.14 EIF4A2-219 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_343_400_+ 343–400 3459.00 0.28 2.85 83.81 EIF4A2-219 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 3952.00 0.32 3.26 63.52 EIF4A2-219 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_348_405_+ 348–405 267.00 0.02 0.22 32.13 EIF4A2-219 retained intron neural progenitor cell (In vitro differentiated cells)