ENCFF193XIP

Library Details

Organism: Homo Sapiens
Biosample: neural progenitor cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR828LSC
Description: Part of ENCODE experiment ENCSR828LSC. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a neuronal pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000415386.2 ENST00000415386.2_302_374_+ 302–374 1235.00 22.35 1.02 100.0 LINC01783-201 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000415804.2 ENST00000415804.2_467_487_+ 467–487 36.00 94.74 0.03 100.0 RPS7P15-201 processed pseudogene neural progenitor cell (In vitro differentiated cells)
ENST00000426867.1 ENST00000426867.1_72_86_+ 72–86 60.00 1.00 0.05 100.0 SNORD62B-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000426867.1 ENST00000426867.1_1_35_+ 1–35 2455.00 40.96 2.02 82.72 SNORD62B-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000426867.1 ENST00000426867.1_1_86_+ 1–86 1772.00 29.57 1.46 100.0 SNORD62B-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000426867.1 ENST00000426867.1_58_86_+ 58–86 146.00 2.44 0.12 100.0 SNORD62B-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000426867.1 ENST00000426867.1_26_86_+ 26–86 121.00 2.02 0.10 100.0 SNORD62B-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000432845.1 ENST00000432845.1_2382_2409_+ 2382–2409 1460.00 98.92 1.20 100.0 MRPL32-203 nonsense mediated decay neural progenitor cell (In vitro differentiated cells)
ENST00000436739.2 ENST00000436739.2_403_416_+ 403–416 4.00 57.14 0.00 100.0 ENST00000436739 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000437139.7 ENST00000437139.7_1182_1225_+ 1182–1225 98.00 0.84 0.08 100.0 TMEM107-204 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000437139.7 ENST00000437139.7_1182_1238_+ 1182–1238 517.00 4.41 0.43 58.95 TMEM107-204 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000437139.7 ENST00000437139.7_1225_1267_+ 1225–1267 206.00 1.76 0.17 100.0 TMEM107-204 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000437139.7 ENST00000437139.7_1182_1267_+ 1182–1267 1235.00 10.54 1.02 100.0 TMEM107-204 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000437139.7 ENST00000437139.7_1209_1267_+ 1209–1267 1117.00 9.53 0.92 55.24 TMEM107-204 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000448136.6 ENST00000448136.6_1027_1095_+ 1027–1095 9541.00 35.74 7.87 70.26 SNHG16-201 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000448136.6 ENST00000448136.6_1026_1098_+ 1026–1098 13616.00 51.01 11.23 100.0 SNHG16-201 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000453082.5 ENST00000453082.5_267_347_+ 267–347 1.00 1.43 0.00 100.0 SNHG14-207 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000458770.1 ENST00000458770.1_7_74_+ 7–74 427951.00 98.11 352.96 98.93 SNORD105B-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000458838.1 ENST00000458838.1_8_75_+ 8–75 2148.00 81.83 1.77 97.41 SNORD121B-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000458892.1 ENST00000458892.1_5_80_+ 5–80 89208.00 91.52 73.58 99.71 SNORD127-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000458892.1 ENST00000458892.1_5_39_+ 5–39 6.00 0.01 0.00 100.0 SNORD127-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000458893.1 ENST00000458893.1_3_64_+ 3–64 29545.00 89.38 24.37 100.0 SNORD42B-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000459254.1 ENST00000459254.1_69_90_+ 69–90 630.00 32.73 0.52 100.0 RNY4P25-201 misc RNA neural progenitor cell (In vitro differentiated cells)
ENST00000459386.1 ENST00000459386.1_9_73_+ 9–73 1687.00 49.90 1.39 100.0 SNORD121A-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 17001.00 42.85 14.02 73.02 SNORD126-201 snoRNA neural progenitor cell (In vitro differentiated cells)