ENCFF193XIP

Library Details

Organism: Homo Sapiens
Biosample: neural progenitor cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR828LSC
Description: Part of ENCODE experiment ENCSR828LSC. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a neuronal pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000386747.1 ENST00000386747.1_4_93_+ 4–93 510113.00 90.21 420.72 99.28 SNORD83A-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000386967.1 ENST00000386967.1_2_70_+ 2–70 32283.00 91.55 26.63 100.0 SNORD41-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000387314.1 ENST00000387314.1_1_54_+ 1–54 36.00 3.24 0.03 100.0 MT-TF-201 Mt tRNA neural progenitor cell (In vitro differentiated cells)
ENST00000387314.1 ENST00000387314.1_35_54_+ 35–54 12.00 1.08 0.01 63.16 MT-TF-201 Mt tRNA neural progenitor cell (In vitro differentiated cells)
ENST00000387314.1 ENST00000387314.1_41_56_+ 41–56 186.00 16.74 0.15 66.67 MT-TF-201 Mt tRNA neural progenitor cell (In vitro differentiated cells)
ENST00000387342.1 ENST00000387342.1_1_53_+ 1–53 996.00 18.05 0.82 100.0 MT-TV-201 Mt tRNA neural progenitor cell (In vitro differentiated cells)
ENST00000387347.2 ENST00000387347.2_1297_1329_+ 1297–1329 125.00 0.62 0.10 100.0 MT-RNR2-201 Mt rRNA neural progenitor cell (In vitro differentiated cells)
ENST00000387347.2 ENST00000387347.2_1500_1528_+ 1500–1528 282.00 1.39 0.23 75.6 MT-RNR2-201 Mt rRNA neural progenitor cell (In vitro differentiated cells)
ENST00000387347.2 ENST00000387347.2_1500_1559_+ 1500–1559 570.00 2.81 0.47 100.0 MT-RNR2-201 Mt rRNA neural progenitor cell (In vitro differentiated cells)
ENST00000387347.2 ENST00000387347.2_1500_1531_+ 1500–1531 601.00 2.97 0.50 87.1 MT-RNR2-201 Mt rRNA neural progenitor cell (In vitro differentiated cells)
ENST00000387347.2 ENST00000387347.2_74_96_+ 74–96 25.00 0.12 0.02 100.0 MT-RNR2-201 Mt rRNA neural progenitor cell (In vitro differentiated cells)
ENST00000387347.2 ENST00000387347.2_1132_1147_+ 1132–1147 54.00 0.27 0.04 100.0 MT-RNR2-201 Mt rRNA neural progenitor cell (In vitro differentiated cells)
ENST00000387347.2 ENST00000387347.2_1357_1376_+ 1357–1376 32.00 0.16 0.03 100.0 MT-RNR2-201 Mt rRNA neural progenitor cell (In vitro differentiated cells)
ENST00000387365.1 ENST00000387365.1_1_51_+ 1–51 305.00 13.74 0.25 89.71 MT-TI-201 Mt tRNA neural progenitor cell (In vitro differentiated cells)
ENST00000387365.1 ENST00000387365.1_1_58_+ 1–58 901.00 40.60 0.74 100.0 MT-TI-201 Mt tRNA neural progenitor cell (In vitro differentiated cells)
ENST00000387372.1 ENST00000387372.1_1_30_+ 1–30 1657.22 13.32 1.37 65.66 MT-TQ-201 Mt tRNA neural progenitor cell (In vitro differentiated cells)
ENST00000387372.1 ENST00000387372.1_1_32_+ 1–32 1493.76 12.01 1.23 46.89 MT-TQ-201 Mt tRNA neural progenitor cell (In vitro differentiated cells)
ENST00000387372.1 ENST00000387372.1_1_55_+ 1–55 518.00 4.16 0.43 100.0 MT-TQ-201 Mt tRNA neural progenitor cell (In vitro differentiated cells)
ENST00000387372.1 ENST00000387372.1_1_36_+ 1–36 3013.00 24.22 2.49 81.54 MT-TQ-201 Mt tRNA neural progenitor cell (In vitro differentiated cells)
ENST00000387377.1 ENST00000387377.1_1_51_+ 1–51 159.00 14.11 0.13 100.0 MT-TM-201 Mt tRNA neural progenitor cell (In vitro differentiated cells)
ENST00000387377.1 ENST00000387377.1_1_31_+ 1–31 296.00 26.26 0.24 61.67 MT-TM-201 Mt tRNA neural progenitor cell (In vitro differentiated cells)
ENST00000387405.1 ENST00000387405.1_1_24_+ 1–24 60.00 21.66 0.05 100.0 MT-TC-201 Mt tRNA neural progenitor cell (In vitro differentiated cells)
ENST00000387409.1 ENST00000387409.1_1_37_+ 1–37 937.00 0.70 0.77 63.7 MT-TY-201 Mt tRNA neural progenitor cell (In vitro differentiated cells)
ENST00000387409.1 ENST00000387409.1_1_50_+ 1–50 1.00 0.00 0.00 100.0 MT-TY-201 Mt tRNA neural progenitor cell (In vitro differentiated cells)
ENST00000387409.1 ENST00000387409.1_1_65_+ 1–65 126528.00 93.85 104.36 100.0 MT-TY-201 Mt tRNA neural progenitor cell (In vitro differentiated cells)