ENCFF192PKY

Library Details

Organism: Homo Sapiens
Biosample: upper lobe of left lung (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR961FIG
Description: Part of ENCODE experiment ENCSR961FIG. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's upper lobe of left lung tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668505.1 ENST00000668505.1_988_1056_+ 988–1056 7293.00 41.88 43.98 100.0 SNHG5-273 lncRNA upper lobe of left lung (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1315_+ 1278–1315 231.00 1.33 1.39 100.0 SNHG5-273 lncRNA upper lobe of left lung (Tissue)
ENST00000668505.1 ENST00000668505.1_1279_1308_+ 1279–1308 2255.00 12.95 13.60 100.0 SNHG5-273 lncRNA upper lobe of left lung (Tissue)
ENST00000670680.1 ENST00000670680.1_1539_1602_+ 1539–1602 38.00 0.28 0.23 47.5 MEG8-251 lncRNA upper lobe of left lung (Tissue)
ENST00000670680.1 ENST00000670680.1_34_69_+ 34–69 82.00 0.60 0.49 41.41 MEG8-251 lncRNA upper lobe of left lung (Tissue)
ENST00000670680.1 ENST00000670680.1_2_69_+ 2–69 12696.00 92.48 76.56 96.78 MEG8-251 lncRNA upper lobe of left lung (Tissue)
ENST00000670680.1 ENST00000670680.1_36_69_+ 36–69 132.00 0.96 0.80 61.97 MEG8-251 lncRNA upper lobe of left lung (Tissue)
ENST00000679646.1 ENST00000679646.1_899_921_+ 899–921 335.00 37.47 2.02 100.0 FMN2-209 protein coding CDS not defined upper lobe of left lung (Tissue)
ENST00000685142.3 ENST00000685142.3_1405_1444_+ 1405–1444 30.00 0.07 0.18 100.0 LINC02739-203 lncRNA upper lobe of left lung (Tissue)
ENST00000685142.3 ENST00000685142.3_1449_1480_+ 1449–1480 92.00 0.20 0.55 100.0 LINC02739-203 lncRNA upper lobe of left lung (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1423_+ 1409–1423 283.00 0.62 1.71 22.02 LINC02739-203 lncRNA upper lobe of left lung (Tissue)
ENST00000685142.3 ENST00000685142.3_1421_1436_+ 1421–1436 803.00 1.77 4.84 100.0 LINC02739-203 lncRNA upper lobe of left lung (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1440_+ 1409–1440 14993.00 32.96 90.41 100.0 LINC02739-203 lncRNA upper lobe of left lung (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1421_+ 1409–1421 1002.00 2.20 6.04 77.98 LINC02739-203 lncRNA upper lobe of left lung (Tissue)
ENST00000685227.3 ENST00000685227.3_1036_1055_+ 1036–1055 2.00 66.67 0.01 100.0 MIR124-1HG-216 lncRNA upper lobe of left lung (Tissue)
ENST00000685307.3 ENST00000685307.3_1198_1226_+ 1198–1226 1218.00 25.65 7.34 100.0 SNHG10-212 lncRNA upper lobe of left lung (Tissue)
ENST00000688264.3 ENST00000688264.3_1362_1387_+ 1362–1387 10.00 0.10 0.06 100.0 MIR222HG-206 lncRNA upper lobe of left lung (Tissue)
ENST00000688264.3 ENST00000688264.3_548_571_+ 548–571 6495.00 63.45 39.17 100.0 MIR222HG-206 lncRNA upper lobe of left lung (Tissue)
ENST00000688264.3 ENST00000688264.3_1402_1424_+ 1402–1424 1960.00 19.15 11.82 69.04 MIR222HG-206 lncRNA upper lobe of left lung (Tissue)
ENST00000697734.1 ENST00000697734.1_1838_1871_+ 1838–1871 3304.00 74.21 19.92 100.0 RPSA-216 retained intron upper lobe of left lung (Tissue)
ENST00000697879.1 ENST00000697879.1_547_568_+ 547–568 15090.00 84.55 91.00 97.8 MIR99AHG-370 lncRNA upper lobe of left lung (Tissue)
ENST00000697879.1 ENST00000697879.1_547_564_+ 547–564 1604.00 8.99 9.67 87.6 MIR99AHG-370 lncRNA upper lobe of left lung (Tissue)
ENST00000699245.1 ENST00000699245.1_739_776_+ 739–776 255.00 92.39 1.54 100.0 HPS4-237 retained intron upper lobe of left lung (Tissue)
ENST00000699458.1 ENST00000699458.1_1475_1492_+ 1475–1492 20.00 80.00 0.12 100.0 MEG8-253 lncRNA upper lobe of left lung (Tissue)
ENST00000699460.1 ENST00000699460.1_2148_2169_+ 2148–2169 117.00 61.26 0.71 100.0 MEG9-206 lncRNA upper lobe of left lung (Tissue)