ENCFF192PKY

Library Details

Organism: Homo Sapiens
Biosample: upper lobe of left lung (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR961FIG
Description: Part of ENCODE experiment ENCSR961FIG. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's upper lobe of left lung tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000485101.5 ENST00000485101.5_2108_2152_+ 2108–2152 444.00 0.07 2.68 100.0 EIF4A2-219 retained intron upper lobe of left lung (Tissue)
ENST00000485101.5 ENST00000485101.5_365_405_+ 365–405 107079.00 17.37 645.70 77.96 EIF4A2-219 retained intron upper lobe of left lung (Tissue)
ENST00000485706.5 ENST00000485706.5_456_524_+ 456–524 39.00 5.80 0.24 100.0 RPL7A-206 protein coding CDS not defined upper lobe of left lung (Tissue)
ENST00000485706.5 ENST00000485706.5_456_485_+ 456–485 92.00 13.69 0.55 100.0 RPL7A-206 protein coding CDS not defined upper lobe of left lung (Tissue)
ENST00000485706.5 ENST00000485706.5_486_524_+ 486–524 218.00 32.44 1.31 100.0 RPL7A-206 protein coding CDS not defined upper lobe of left lung (Tissue)
ENST00000485756.1 ENST00000485756.1_122_192_+ 122–192 20309.00 7.53 122.47 97.48 RPL21-209 retained intron upper lobe of left lung (Tissue)
ENST00000485756.1 ENST00000485756.1_123_168_+ 123–168 7806.00 2.90 47.07 100.0 RPL21-209 retained intron upper lobe of left lung (Tissue)
ENST00000485756.1 ENST00000485756.1_123_189_+ 123–189 234470.00 86.99 1413.89 95.0 RPL21-209 retained intron upper lobe of left lung (Tissue)
ENST00000485756.1 ENST00000485756.1_173_189_+ 173–189 11.00 0.00 0.07 100.0 RPL21-209 retained intron upper lobe of left lung (Tissue)
ENST00000485756.1 ENST00000485756.1_138_189_+ 138–189 1024.00 0.38 6.17 100.0 RPL21-209 retained intron upper lobe of left lung (Tissue)
ENST00000486255.1 ENST00000486255.1_1073_1096_+ 1073–1096 30.00 20.00 0.18 100.0 GABRE-209 retained intron upper lobe of left lung (Tissue)
ENST00000488946.1 ENST00000488946.1_844_886_+ 844–886 318.00 4.73 1.92 100.0 RPL13A-212 retained intron upper lobe of left lung (Tissue)
ENST00000488946.1 ENST00000488946.1_197_235_+ 197–235 316.00 4.70 1.91 100.0 RPL13A-212 retained intron upper lobe of left lung (Tissue)
ENST00000488946.1 ENST00000488946.1_1095_1159_+ 1095–1159 9.00 0.13 0.05 100.0 RPL13A-212 retained intron upper lobe of left lung (Tissue)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 574.00 22.94 3.46 100.0 RPL7A-207 protein coding CDS not defined upper lobe of left lung (Tissue)
ENST00000489392.1 ENST00000489392.1_151_191_+ 151–191 303.00 12.11 1.83 100.0 RPL7A-207 protein coding CDS not defined upper lobe of left lung (Tissue)
ENST00000493449.5 ENST00000493449.5_96_109_+ 96–109 2772.00 86.36 16.72 100.0 RGS11-208 retained intron upper lobe of left lung (Tissue)
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 4330.00 73.17 26.11 92.5 NOP56-217 protein coding CDS not defined upper lobe of left lung (Tissue)
ENST00000496055.5 ENST00000496055.5_471_515_+ 471–515 523.00 2.76 3.15 70.2 RABGGTB-213 protein coding CDS not defined upper lobe of left lung (Tissue)
ENST00000496055.5 ENST00000496055.5_505_553_+ 505–553 2502.00 13.21 15.09 100.0 RABGGTB-213 protein coding CDS not defined upper lobe of left lung (Tissue)
ENST00000496055.5 ENST00000496055.5_493_553_+ 493–553 4793.00 25.30 28.90 100.0 RABGGTB-213 protein coding CDS not defined upper lobe of left lung (Tissue)
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 222.00 1.17 1.34 29.8 RABGGTB-213 protein coding CDS not defined upper lobe of left lung (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 705.00 3.72 4.25 87.14 RABGGTB-213 protein coding CDS not defined upper lobe of left lung (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 818.00 4.32 4.93 100.0 RABGGTB-213 protein coding CDS not defined upper lobe of left lung (Tissue)
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 1380.00 65.50 8.32 100.0 GNL3-211 retained intron upper lobe of left lung (Tissue)