ENCFF192PKY

Library Details

Organism: Homo Sapiens
Biosample: upper lobe of left lung (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR961FIG
Description: Part of ENCODE experiment ENCSR961FIG. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's upper lobe of left lung tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000458770.1 ENST00000458770.1_7_74_+ 7–74 18348.00 74.43 110.64 93.38 SNORD105B-201 snoRNA upper lobe of left lung (Tissue)
ENST00000458838.1 ENST00000458838.1_8_75_+ 8–75 141.00 29.62 0.85 57.55 SNORD121B-201 snoRNA upper lobe of left lung (Tissue)
ENST00000458892.1 ENST00000458892.1_5_39_+ 5–39 3135.00 73.26 18.90 100.0 SNORD127-201 snoRNA upper lobe of left lung (Tissue)
ENST00000458893.1 ENST00000458893.1_3_64_+ 3–64 1867.00 87.69 11.26 100.0 SNORD42B-201 snoRNA upper lobe of left lung (Tissue)
ENST00000459254.1 ENST00000459254.1_69_90_+ 69–90 260.00 4.60 1.57 100.0 RNY4P25-201 misc RNA upper lobe of left lung (Tissue)
ENST00000459386.1 ENST00000459386.1_9_73_+ 9–73 57.00 61.29 0.34 100.0 SNORD121A-201 snoRNA upper lobe of left lung (Tissue)
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 416.00 85.25 2.51 100.0 SNORD126-201 snoRNA upper lobe of left lung (Tissue)
ENST00000459577.1 ENST00000459577.1_12_91_+ 12–91 7.00 0.65 0.04 100.0 SNORD124-201 snoRNA upper lobe of left lung (Tissue)
ENST00000461448.6 ENST00000461448.6_522_587_+ 522–587 946.00 39.52 5.70 100.0 SNHG12-201 retained intron upper lobe of left lung (Tissue)
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 2939.00 96.33 17.72 100.0 SMC1A-204 retained intron upper lobe of left lung (Tissue)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 387.00 15.52 2.33 100.0 DDX39B-219 retained intron upper lobe of left lung (Tissue)
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 1136.00 45.55 6.85 100.0 DDX39B-219 retained intron upper lobe of left lung (Tissue)
ENST00000484599.1 ENST00000484599.1_580_645_+ 580–645 1877.00 76.67 11.32 100.0 RPS8-206 protein coding CDS not defined upper lobe of left lung (Tissue)
ENST00000484610.5 ENST00000484610.5_361_433_+ 361–433 42.00 1.42 0.25 85.71 RPL13-207 retained intron upper lobe of left lung (Tissue)
ENST00000484610.5 ENST00000484610.5_392_433_+ 392–433 1354.00 45.90 8.16 100.0 RPL13-207 retained intron upper lobe of left lung (Tissue)
ENST00000485101.5 ENST00000485101.5_360_408_+ 360–408 1621.00 0.26 9.77 52.02 EIF4A2-219 retained intron upper lobe of left lung (Tissue)
ENST00000485101.5 ENST00000485101.5_343_390_+ 343–390 10212.00 1.66 61.58 90.92 EIF4A2-219 retained intron upper lobe of left lung (Tissue)
ENST00000485101.5 ENST00000485101.5_343_408_+ 343–408 67073.00 10.88 404.46 86.56 EIF4A2-219 retained intron upper lobe of left lung (Tissue)
ENST00000485101.5 ENST00000485101.5_343_405_+ 343–405 298057.00 48.36 1797.33 94.84 EIF4A2-219 retained intron upper lobe of left lung (Tissue)
ENST00000485101.5 ENST00000485101.5_365_408_+ 365–408 11059.00 1.79 66.69 43.84 EIF4A2-219 retained intron upper lobe of left lung (Tissue)
ENST00000485101.5 ENST00000485101.5_2108_2152_+ 2108–2152 444.00 0.07 2.68 100.0 EIF4A2-219 retained intron upper lobe of left lung (Tissue)
ENST00000485101.5 ENST00000485101.5_365_405_+ 365–405 107079.00 17.37 645.70 77.96 EIF4A2-219 retained intron upper lobe of left lung (Tissue)
ENST00000485101.5 ENST00000485101.5_343_400_+ 343–400 577.00 0.09 3.48 23.32 EIF4A2-219 retained intron upper lobe of left lung (Tissue)
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 2791.00 0.45 16.83 33.0 EIF4A2-219 retained intron upper lobe of left lung (Tissue)
ENST00000485101.5 ENST00000485101.5_348_405_+ 348–405 4735.00 0.77 28.55 72.17 EIF4A2-219 retained intron upper lobe of left lung (Tissue)