ENCFF181JNF

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR866ZSG
Description: Part of ENCODE experiment ENCSR866ZSG. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_1_49_+ 1–49 715.00 4.52 2.72 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_34_53_+ 34–53 5.00 0.03 0.02 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_1_52_+ 1–52 1164.00 0.06 4.43 89.61 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_13_32_+ 13–32 2150.00 0.11 8.17 56.89 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_10_32_+ 10–32 2004.00 0.10 7.62 72.45 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR17-8222238 tRNA-transcript-chr17-8222238_1_33_+ 1–33 5364.00 30.90 20.40 74.57 TRNA-TRANSCRIPT-CHR17-8222238 Asp tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR1-7930279 tRNA-transcript-chr1-7930279_1_33_+ 1–33 40682.00 99.01 154.69 100.0 TRNA-TRANSCRIPT-CHR1-7930279 Pseudo tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR19-45478602 tRNA-transcript-chr19-45478602_1_37_+ 1–37 265.00 19.33 1.01 83.33 TRNA-TRANSCRIPT-CHR19-45478602 SeC(e) tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR20-45322361 tRNA-transcript-chr20-45322361_1_33_+ 1–33 272.00 90.07 1.03 100.0 TRNA-TRANSCRIPT-CHR20-45322361 Pseudo tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_3_52_+ 3–52 135.00 0.23 0.51 93.1 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_1_52_+ 1–52 10.00 0.02 0.04 6.9 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_1_32_+ 1–32 36328.00 61.85 138.13 86.46 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_35_+ 1–35 17883.90 39.82 68.00 44.49 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_28_+ 1–28 684.00 1.52 2.60 90.96 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_33_+ 1–33 25114.90 55.92 95.49 60.87 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR2-203364408 tRNA-transcript-chr2-203364408_2_32_+ 2–32 831062.00 98.24 3159.95 99.73 TRNA-TRANSCRIPT-CHR2-203364408 Pseudo tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR3-104160680 tRNA-transcript-chr3-104160680_12_33_+ 12–33 7837.00 39.68 29.80 100.0 TRNA-TRANSCRIPT-CHR3-104160680 Pseudo tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR5-181188854 tRNA-transcript-chr5-181188854_1_32_+ 1–32 4522.00 32.88 17.19 61.38 TRNA-TRANSCRIPT-CHR5-181188854 Pro tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR5-181218270 tRNA-transcript-chr5-181218270_1_39_+ 1–39 144.00 0.00 0.55 100.0 TRNA-TRANSCRIPT-CHR5-181218270 Val tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR6-125780247 tRNA-transcript-chr6-125780247_1_42_+ 1–42 336.00 0.01 1.28 78.5 TRNA-TRANSCRIPT-CHR6-125780247 Glu tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR6-144216547 tRNA-transcript-chr6-144216547_1_50_+ 1–50 3677.00 80.65 13.98 100.0 TRNA-TRANSCRIPT-CHR6-144216547 Leu tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR6-26311196 tRNA-transcript-chr6-26311196_1_53_+ 1–53 121.00 4.06 0.46 100.0 TRNA-TRANSCRIPT-CHR6-26311196 Gln tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR6-26538054 tRNA-transcript-chr6-26538054_1_33_+ 1–33 3194419.00 99.72 12146.16 99.87 TRNA-TRANSCRIPT-CHR6-26538054 Val tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR6-27158127 tRNA-transcript-chr6-27158127_13_33_+ 13–33 141.00 0.42 0.54 100.0 TRNA-TRANSCRIPT-CHR6-27158127 His tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR6-27158127 tRNA-transcript-chr6-27158127_1_33_+ 1–33 27175.00 80.91 103.33 95.01 TRNA-TRANSCRIPT-CHR6-27158127 His tRNA gastroesophageal sphincter (Tissue)