ENCFF181JNF

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR866ZSG
Description: Part of ENCODE experiment ENCSR866ZSG. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362610.1 ENST00000362610.1_1_42_+ 1–42 82.00 2.33 0.31 89.13 RNA5SP389-201 rRNA pseudogene gastroesophageal sphincter (Tissue)
ENST00000362610.1 ENST00000362610.1_1_70_+ 1–70 59.00 1.68 0.22 100.0 RNA5SP389-201 rRNA pseudogene gastroesophageal sphincter (Tissue)
ENST00000362698.1 ENST00000362698.1_47_116_+ 47–116 1078.00 5.36 4.10 75.33 RNU5A-1-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000362698.1 ENST00000362698.1_24_116_+ 24–116 579.11 2.88 2.20 36.19 RNU5A-1-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000362698.1 ENST00000362698.1_34_116_+ 34–116 615.00 3.06 2.34 33.1 RNU5A-1-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000362698.1 ENST00000362698.1_60_116_+ 60–116 3902.00 19.39 14.84 71.64 RNU5A-1-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000362698.1 ENST00000362698.1_66_116_+ 66–116 162.35 0.81 0.62 49.05 RNU5A-1-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000362698.1 ENST00000362698.1_29_116_+ 29–116 3151.00 15.66 11.98 75.82 RNU5A-1-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000362698.1 ENST00000362698.1_55_116_+ 55–116 1037.00 5.15 3.94 67.87 RNU5A-1-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000362698.1 ENST00000362698.1_40_116_+ 40–116 125.00 0.62 0.48 100.0 RNU5A-1-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000362698.1 ENST00000362698.1_36_116_+ 36–116 1691.00 8.40 6.43 84.51 RNU5A-1-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000362698.1 ENST00000362698.1_63_116_+ 63–116 1361.00 6.76 5.17 57.4 RNU5A-1-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000362698.1 ENST00000362698.1_22_116_+ 22–116 634.88 3.16 2.41 60.12 RNU5A-1-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000362698.1 ENST00000362698.1_52_116_+ 52–116 699.00 3.47 2.66 62.19 RNU5A-1-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000362698.1 ENST00000362698.1_68_116_+ 68–116 203.83 1.01 0.78 71.77 RNU5A-1-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000362723.1 ENST00000362723.1_3_71_+ 3–71 431.00 83.53 1.64 100.0 SNORD114-14-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000362883.1 ENST00000362883.1_35_70_+ 35–70 459.00 1.82 1.75 100.0 SNORD104-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000362883.1 ENST00000362883.1_10_70_+ 10–70 2031.00 8.07 7.72 100.0 SNORD104-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000362912.1 ENST00000362912.1_2_82_+ 2–82 373.00 36.53 1.42 96.63 SNORD115-9-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000362973.1 ENST00000362973.1_96_117_+ 96–117 24034.00 68.07 91.38 86.08 RNA5SP358-201 rRNA pseudogene gastroesophageal sphincter (Tissue)
ENST00000363124.1 ENST00000363124.1_17_32_+ 17–32 130.00 3.19 0.49 50.58 RNA5SP145-201 rRNA pseudogene gastroesophageal sphincter (Tissue)
ENST00000363182.1 ENST00000363182.1_1_32_+ 1–32 85.00 39.53 0.32 100.0 Y_RNA.105-201 misc RNA gastroesophageal sphincter (Tissue)
ENST00000363194.1 ENST00000363194.1_1_32_+ 1–32 83.00 9.13 0.32 100.0 RNY4P9-201 misc RNA gastroesophageal sphincter (Tissue)
ENST00000363286.1 ENST00000363286.1_55_116_+ 55–116 372.00 19.89 1.41 100.0 RNU5B-1-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000363286.1 ENST00000363286.1_63_116_+ 63–116 321.00 17.17 1.22 100.0 RNU5B-1-201 snRNA gastroesophageal sphincter (Tissue)