ENCFF181JNF

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR866ZSG
Description: Part of ENCODE experiment ENCSR866ZSG. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668505.1 ENST00000668505.1_1278_1340_+ 1278–1340 149.00 0.09 0.57 100.0 SNHG5-273 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1361_+ 1278–1361 1532.00 0.98 5.83 97.27 SNHG5-273 lncRNA gastroesophageal sphincter (Tissue)
ENST00000669673.1 ENST00000669673.1_3794_3884_+ 3794–3884 203.00 12.85 0.77 92.27 SNHG14-323 lncRNA gastroesophageal sphincter (Tissue)
ENST00000670680.1 ENST00000670680.1_2_69_+ 2–69 29118.00 80.10 110.72 96.74 MEG8-251 lncRNA gastroesophageal sphincter (Tissue)
ENST00000670680.1 ENST00000670680.1_34_69_+ 34–69 537.00 1.48 2.04 54.24 MEG8-251 lncRNA gastroesophageal sphincter (Tissue)
ENST00000670680.1 ENST00000670680.1_36_69_+ 36–69 621.00 1.71 2.36 53.63 MEG8-251 lncRNA gastroesophageal sphincter (Tissue)
ENST00000670680.1 ENST00000670680.1_1539_1602_+ 1539–1602 2208.00 6.07 8.40 85.52 MEG8-251 lncRNA gastroesophageal sphincter (Tissue)
ENST00000670680.1 ENST00000670680.1_10_70_+ 10–70 5.00 0.01 0.02 100.0 MEG8-251 lncRNA gastroesophageal sphincter (Tissue)
ENST00000670697.1 ENST00000670697.1_232_313_+ 232–313 2098.00 35.34 7.98 58.16 SNHG14-336 lncRNA gastroesophageal sphincter (Tissue)
ENST00000670697.1 ENST00000670697.1_233_310_+ 233–310 3321.00 55.95 12.63 93.05 SNHG14-336 lncRNA gastroesophageal sphincter (Tissue)
ENST00000671491.1 ENST00000671491.1_1778_1868_+ 1778–1868 3867.00 78.15 14.70 94.76 SNHG14-341 lncRNA gastroesophageal sphincter (Tissue)
ENST00000676514.1 ENST00000676514.1_1978_2054_+ 1978–2054 2153.00 30.15 8.19 100.0 NCL-211 retained intron gastroesophageal sphincter (Tissue)
ENST00000679646.1 ENST00000679646.1_899_921_+ 899–921 250.00 30.08 0.95 100.0 FMN2-209 protein coding CDS not defined gastroesophageal sphincter (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1423_+ 1409–1423 62.00 1.12 0.24 20.46 LINC02739-203 lncRNA gastroesophageal sphincter (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1440_+ 1409–1440 2067.00 37.22 7.86 100.0 LINC02739-203 lncRNA gastroesophageal sphincter (Tissue)
ENST00000685142.3 ENST00000685142.3_1405_1444_+ 1405–1444 4.00 0.07 0.02 100.0 LINC02739-203 lncRNA gastroesophageal sphincter (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1421_+ 1409–1421 241.00 4.34 0.92 79.54 LINC02739-203 lncRNA gastroesophageal sphincter (Tissue)
ENST00000685142.3 ENST00000685142.3_1421_1436_+ 1421–1436 46.00 0.83 0.17 100.0 LINC02739-203 lncRNA gastroesophageal sphincter (Tissue)
ENST00000685142.3 ENST00000685142.3_1449_1480_+ 1449–1480 1.00 0.02 0.00 100.0 LINC02739-203 lncRNA gastroesophageal sphincter (Tissue)
ENST00000685307.3 ENST00000685307.3_1198_1226_+ 1198–1226 21.00 11.11 0.08 100.0 SNHG10-212 lncRNA gastroesophageal sphincter (Tissue)
ENST00000686899.3 ENST00000686899.3_568_647_+ 568–647 2856.44 34.26 10.86 49.27 SNHG19-202 lncRNA gastroesophageal sphincter (Tissue)
ENST00000686899.3 ENST00000686899.3_568_649_+ 568–649 5036.37 60.41 19.15 64.31 SNHG19-202 lncRNA gastroesophageal sphincter (Tissue)
ENST00000688264.3 ENST00000688264.3_548_571_+ 548–571 2201.00 75.87 8.37 100.0 MIR222HG-206 lncRNA gastroesophageal sphincter (Tissue)
ENST00000688264.3 ENST00000688264.3_1402_1424_+ 1402–1424 445.00 15.34 1.69 83.02 MIR222HG-206 lncRNA gastroesophageal sphincter (Tissue)
ENST00000688264.3 ENST00000688264.3_1362_1387_+ 1362–1387 11.00 0.38 0.04 100.0 MIR222HG-206 lncRNA gastroesophageal sphincter (Tissue)