ENCFF181JNF

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR866ZSG
Description: Part of ENCODE experiment ENCSR866ZSG. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000617785.1 ENST00000617785.1_93_116_+ 93–116 242.00 1.71 0.92 100.0 U2.3-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000617785.1 ENST00000617785.1_22_116_+ 22–116 214.00 1.51 0.81 100.0 U2.3-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000617785.1 ENST00000617785.1_1_90_+ 1–90 0.87 0.01 0.00 86.92 U2.3-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000619225.1 ENST00000619225.1_155_188_+ 155–188 1265.00 10.43 4.81 100.0 U2.6-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000619323.3 ENST00000619323.3_499_516_+ 499–516 72.00 0.76 0.27 34.78 ENST00000619323 lncRNA gastroesophageal sphincter (Tissue)
ENST00000619323.3 ENST00000619323.3_499_520_+ 499–520 8816.00 92.67 33.52 97.62 ENST00000619323 lncRNA gastroesophageal sphincter (Tissue)
ENST00000625402.1 ENST00000625402.1_2_49_+ 2–49 56.00 11.67 0.21 100.0 SCARNA4-202 scaRNA gastroesophageal sphincter (Tissue)
ENST00000625572.1 ENST00000625572.1_23_92_+ 23–92 744.00 58.12 2.83 100.0 ENST00000625572 miRNA gastroesophageal sphincter (Tissue)
ENST00000628177.1 ENST00000628177.1_1_79_+ 1–79 1147.00 85.03 4.36 100.0 ENST00000628177 snoRNA gastroesophageal sphincter (Tissue)
ENST00000630615.1 ENST00000630615.1_10_70_+ 10–70 326.00 88.59 1.24 100.0 ENST00000630615 snoRNA gastroesophageal sphincter (Tissue)
ENST00000635183.1 ENST00000635183.1_1617_1632_+ 1617–1632 902.00 64.85 3.43 100.0 DMRT2-209 protein coding gastroesophageal sphincter (Tissue)
ENST00000635183.1 ENST00000635183.1_323_334_+ 323–334 39.00 2.80 0.15 100.0 DMRT2-209 protein coding gastroesophageal sphincter (Tissue)
ENST00000636377.1 ENST00000636377.1_38_65_+ 38–65 132.00 16.22 0.50 100.0 SNORD98-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000636377.1 ENST00000636377.1_2_65_+ 2–65 127.00 15.60 0.48 100.0 SNORD98-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000636668.1 ENST00000636668.1_3209_3232_+ 3209–3232 21524.16 58.96 81.84 60.54 MIR106AHG-201 lncRNA gastroesophageal sphincter (Tissue)
ENST00000636668.1 ENST00000636668.1_3371_3391_+ 3371–3391 11.93 0.03 0.05 85.2 MIR106AHG-201 lncRNA gastroesophageal sphincter (Tissue)
ENST00000638012.2 ENST00000638012.2_1_28_+ 1–28 116.00 17.66 0.44 100.0 MEG8-222 lncRNA gastroesophageal sphincter (Tissue)
ENST00000638012.2 ENST00000638012.2_1_70_+ 1–70 281.00 42.77 1.07 100.0 MEG8-222 lncRNA gastroesophageal sphincter (Tissue)
ENST00000640631.2 ENST00000640631.2_7388_7482_+ 7388–7482 1924.00 7.37 7.32 98.87 SNHG14-224 lncRNA gastroesophageal sphincter (Tissue)
ENST00000640631.2 ENST00000640631.2_4125_4215_+ 4125–4215 12132.00 46.48 46.13 92.99 SNHG14-224 lncRNA gastroesophageal sphincter (Tissue)
ENST00000640631.2 ENST00000640631.2_9465_9551_+ 9465–9551 3394.00 13.00 12.91 100.0 SNHG14-224 lncRNA gastroesophageal sphincter (Tissue)
ENST00000640631.2 ENST00000640631.2_5267_5357_+ 5267–5357 3481.00 13.34 13.24 89.69 SNHG14-224 lncRNA gastroesophageal sphincter (Tissue)
ENST00000640631.2 ENST00000640631.2_4125_4168_+ 4125–4168 7.00 0.03 0.03 100.0 SNHG14-224 lncRNA gastroesophageal sphincter (Tissue)
ENST00000640631.2 ENST00000640631.2_7389_7479_+ 7389–7479 111.00 0.43 0.42 39.64 SNHG14-224 lncRNA gastroesophageal sphincter (Tissue)
ENST00000640631.2 ENST00000640631.2_288_349_+ 288–349 499.00 1.91 1.90 64.14 SNHG14-224 lncRNA gastroesophageal sphincter (Tissue)