ENCFF181JNF

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR866ZSG
Description: Part of ENCODE experiment ENCSR866ZSG. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000585881.5 ENST00000585881.5_104_126_+ 104–126 3493.00 60.94 13.28 89.79 NSRP1-214 protein coding gastroesophageal sphincter (Tissue)
ENST00000587762.2 ENST00000587762.2_6337_6420_+ 6337–6420 30.00 0.51 0.11 100.0 MIR23AHG-201 lncRNA gastroesophageal sphincter (Tissue)
ENST00000587762.2 ENST00000587762.2_6314_6334_+ 6314–6334 1219.00 20.71 4.64 94.79 MIR23AHG-201 lncRNA gastroesophageal sphincter (Tissue)
ENST00000587762.2 ENST00000587762.2_6462_6481_+ 6462–6481 1043.00 17.72 3.97 78.72 MIR23AHG-201 lncRNA gastroesophageal sphincter (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6638_+ 6619–6638 1656.00 28.14 6.30 90.99 MIR23AHG-201 lncRNA gastroesophageal sphincter (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 612.00 10.40 2.33 66.09 MIR23AHG-201 lncRNA gastroesophageal sphincter (Tissue)
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 3299.00 69.32 12.54 100.0 ODAD3-204 nonsense mediated decay gastroesophageal sphincter (Tissue)
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 159.00 2.47 0.60 100.0 VMP1-217 retained intron gastroesophageal sphincter (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3402_+ 3343–3402 24.00 0.37 0.09 100.0 VMP1-217 retained intron gastroesophageal sphincter (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 4321.00 67.24 16.43 76.05 VMP1-217 retained intron gastroesophageal sphincter (Tissue)
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 57.00 0.07 0.22 100.0 C19orf48P-203 retained intron gastroesophageal sphincter (Tissue)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 47177.70 61.05 179.38 68.24 C19orf48P-203 retained intron gastroesophageal sphincter (Tissue)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 26627.81 34.46 101.25 35.81 C19orf48P-203 retained intron gastroesophageal sphincter (Tissue)
ENST00000595794.5 ENST00000595794.5_236_330_+ 236–330 1433.00 1.85 5.45 89.39 C19orf48P-203 retained intron gastroesophageal sphincter (Tissue)
ENST00000595794.5 ENST00000595794.5_236_276_+ 236–276 5.00 0.01 0.02 100.0 C19orf48P-203 retained intron gastroesophageal sphincter (Tissue)
ENST00000595794.5 ENST00000595794.5_230_318_+ 230–318 3.00 0.00 0.01 100.0 C19orf48P-203 retained intron gastroesophageal sphincter (Tissue)
ENST00000600027.5 ENST00000600027.5_434_519_+ 434–519 38.00 6.29 0.14 100.0 RPS11-206 retained intron gastroesophageal sphincter (Tissue)
ENST00000600027.5 ENST00000600027.5_441_519_+ 441–519 282.00 46.69 1.07 100.0 RPS11-206 retained intron gastroesophageal sphincter (Tissue)
ENST00000602315.3 ENST00000602315.3_752_771_+ 752–771 3444231.00 87.03 13096.02 87.95 CARMN-209 lncRNA gastroesophageal sphincter (Tissue)
ENST00000602478.2 ENST00000602478.2_671_758_+ 671–758 279.00 40.67 1.06 100.0 ENST00000602478 lncRNA gastroesophageal sphincter (Tissue)
ENST00000604535.1 ENST00000604535.1_1396_1410_+ 1396–1410 76.00 57.58 0.29 100.0 PPFIA1P1-201 processed pseudogene gastroesophageal sphincter (Tissue)
ENST00000606412.1 ENST00000606412.1_4_67_+ 4–67 138.00 7.55 0.52 100.0 SNORD114-21-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000606412.1 ENST00000606412.1_35_67_+ 35–67 1279.00 69.97 4.86 100.0 SNORD114-21-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000606510.1 ENST00000606510.1_2_82_+ 2–82 226.00 28.94 0.86 100.0 SNORD115-40-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000606724.1 ENST00000606724.1_22_43_+ 22–43 1105.00 93.72 4.20 100.0 MIR98-201 miRNA gastroesophageal sphincter (Tissue)