ENCFF181JNF

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR866ZSG
Description: Part of ENCODE experiment ENCSR866ZSG. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000488946.1 ENST00000488946.1_155_235_+ 155–235 2849.00 11.55 10.83 99.72 RPL13A-212 retained intron gastroesophageal sphincter (Tissue)
ENST00000488946.1 ENST00000488946.1_804_886_+ 804–886 14173.00 57.47 53.89 83.83 RPL13A-212 retained intron gastroesophageal sphincter (Tissue)
ENST00000488946.1 ENST00000488946.1_197_235_+ 197–235 280.00 1.14 1.06 100.0 RPL13A-212 retained intron gastroesophageal sphincter (Tissue)
ENST00000488946.1 ENST00000488946.1_1363_1444_+ 1363–1444 64.00 0.26 0.24 100.0 RPL13A-212 retained intron gastroesophageal sphincter (Tissue)
ENST00000488946.1 ENST00000488946.1_1095_1159_+ 1095–1159 59.00 0.24 0.22 100.0 RPL13A-212 retained intron gastroesophageal sphincter (Tissue)
ENST00000489392.1 ENST00000489392.1_116_191_+ 116–191 1381.00 60.31 5.25 91.28 RPL7A-207 protein coding CDS not defined gastroesophageal sphincter (Tissue)
ENST00000489392.1 ENST00000489392.1_151_191_+ 151–191 61.00 2.66 0.23 100.0 RPL7A-207 protein coding CDS not defined gastroesophageal sphincter (Tissue)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 85.00 3.71 0.32 100.0 RPL7A-207 protein coding CDS not defined gastroesophageal sphincter (Tissue)
ENST00000490232.3 ENST00000490232.3_229_300_+ 229–300 84.00 1.76 0.32 11.31 RN7SL2-201 misc RNA gastroesophageal sphincter (Tissue)
ENST00000490232.3 ENST00000490232.3_219_300_+ 219–300 384.00 8.07 1.46 100.0 RN7SL2-201 misc RNA gastroesophageal sphincter (Tissue)
ENST00000493449.5 ENST00000493449.5_96_109_+ 96–109 5286.00 95.45 20.10 100.0 RGS11-208 retained intron gastroesophageal sphincter (Tissue)
ENST00000494697.5 ENST00000494697.5_274_348_+ 274–348 128802.00 72.73 489.74 84.99 NOP56-217 protein coding CDS not defined gastroesophageal sphincter (Tissue)
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 17439.00 9.85 66.31 85.12 NOP56-217 protein coding CDS not defined gastroesophageal sphincter (Tissue)
ENST00000496055.5 ENST00000496055.5_505_553_+ 505–553 309.00 0.55 1.17 100.0 RABGGTB-213 protein coding CDS not defined gastroesophageal sphincter (Tissue)
ENST00000496055.5 ENST00000496055.5_493_553_+ 493–553 941.00 1.67 3.58 100.0 RABGGTB-213 protein coding CDS not defined gastroesophageal sphincter (Tissue)
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 57.00 0.10 0.22 52.29 RABGGTB-213 protein coding CDS not defined gastroesophageal sphincter (Tissue)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 38989.00 69.20 148.25 95.69 RABGGTB-213 protein coding CDS not defined gastroesophageal sphincter (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 8629.00 15.32 32.81 84.66 RABGGTB-213 protein coding CDS not defined gastroesophageal sphincter (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 103.00 0.18 0.39 100.0 RABGGTB-213 protein coding CDS not defined gastroesophageal sphincter (Tissue)
ENST00000496055.5 ENST00000496055.5_471_515_+ 471–515 52.00 0.09 0.20 47.71 RABGGTB-213 protein coding CDS not defined gastroesophageal sphincter (Tissue)
ENST00000496254.5 ENST00000496254.5_774_811_+ 774–811 232.00 15.86 0.88 100.0 GNL3-211 retained intron gastroesophageal sphincter (Tissue)
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 1011.00 69.10 3.84 100.0 GNL3-211 retained intron gastroesophageal sphincter (Tissue)
ENST00000497519.1 ENST00000497519.1_681_708_+ 681–708 47.00 4.85 0.18 100.0 RPL5-205 retained intron gastroesophageal sphincter (Tissue)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 618.00 63.78 2.35 100.0 RPL5-205 retained intron gastroesophageal sphincter (Tissue)
ENST00000499525.1 ENST00000499525.1_506_558_+ 506–558 19.00 0.80 0.07 100.0 ZBED9-AS1-201 lncRNA gastroesophageal sphincter (Tissue)