ENCFF181JNF

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR866ZSG
Description: Part of ENCODE experiment ENCSR866ZSG. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000485101.5 ENST00000485101.5_343_376_+ 343–376 338.00 0.26 1.29 100.0 EIF4A2-219 retained intron gastroesophageal sphincter (Tissue)
ENST00000485101.5 ENST00000485101.5_2108_2152_+ 2108–2152 31.00 0.02 0.12 100.0 EIF4A2-219 retained intron gastroesophageal sphincter (Tissue)
ENST00000485101.5 ENST00000485101.5_343_390_+ 343–390 1091.00 0.83 4.15 86.11 EIF4A2-219 retained intron gastroesophageal sphincter (Tissue)
ENST00000485101.5 ENST00000485101.5_343_408_+ 343–408 12569.00 9.53 47.79 90.17 EIF4A2-219 retained intron gastroesophageal sphincter (Tissue)
ENST00000485101.5 ENST00000485101.5_365_405_+ 365–405 36874.00 27.95 140.21 80.97 EIF4A2-219 retained intron gastroesophageal sphincter (Tissue)
ENST00000485101.5 ENST00000485101.5_343_405_+ 343–405 38343.00 29.06 145.79 98.34 EIF4A2-219 retained intron gastroesophageal sphincter (Tissue)
ENST00000485101.5 ENST00000485101.5_343_418_+ 343–418 247.00 0.19 0.94 100.0 EIF4A2-219 retained intron gastroesophageal sphincter (Tissue)
ENST00000485101.5 ENST00000485101.5_365_408_+ 365–408 3041.00 2.30 11.56 40.34 EIF4A2-219 retained intron gastroesophageal sphincter (Tissue)
ENST00000485101.5 ENST00000485101.5_343_434_+ 343–434 50.00 0.04 0.19 100.0 EIF4A2-219 retained intron gastroesophageal sphincter (Tissue)
ENST00000485101.5 ENST00000485101.5_360_408_+ 360–408 760.00 0.58 2.89 59.24 EIF4A2-219 retained intron gastroesophageal sphincter (Tissue)
ENST00000485101.5 ENST00000485101.5_343_400_+ 343–400 149.00 0.11 0.57 56.23 EIF4A2-219 retained intron gastroesophageal sphincter (Tissue)
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 412.00 0.31 1.57 40.51 EIF4A2-219 retained intron gastroesophageal sphincter (Tissue)
ENST00000485101.5 ENST00000485101.5_362_405_+ 362–405 17063.00 12.93 64.88 70.51 EIF4A2-219 retained intron gastroesophageal sphincter (Tissue)
ENST00000485390.5 ENST00000485390.5_230_303_+ 230–303 5822.00 95.87 22.14 100.0 RPS8-207 protein coding CDS not defined gastroesophageal sphincter (Tissue)
ENST00000485706.5 ENST00000485706.5_456_485_+ 456–485 29.00 5.45 0.11 100.0 RPL7A-206 protein coding CDS not defined gastroesophageal sphincter (Tissue)
ENST00000485706.5 ENST00000485706.5_486_524_+ 486–524 165.00 31.02 0.63 100.0 RPL7A-206 protein coding CDS not defined gastroesophageal sphincter (Tissue)
ENST00000485706.5 ENST00000485706.5_456_524_+ 456–524 21.00 3.95 0.08 100.0 RPL7A-206 protein coding CDS not defined gastroesophageal sphincter (Tissue)
ENST00000485756.1 ENST00000485756.1_173_189_+ 173–189 3.00 0.00 0.01 100.0 RPL21-209 retained intron gastroesophageal sphincter (Tissue)
ENST00000485756.1 ENST00000485756.1_123_168_+ 123–168 1384.00 0.52 5.26 100.0 RPL21-209 retained intron gastroesophageal sphincter (Tissue)
ENST00000485756.1 ENST00000485756.1_123_189_+ 123–189 227854.00 85.26 866.37 97.93 RPL21-209 retained intron gastroesophageal sphincter (Tissue)
ENST00000485756.1 ENST00000485756.1_138_189_+ 138–189 695.00 0.26 2.64 100.0 RPL21-209 retained intron gastroesophageal sphincter (Tissue)
ENST00000485756.1 ENST00000485756.1_122_192_+ 122–192 35030.00 13.11 133.19 97.72 RPL21-209 retained intron gastroesophageal sphincter (Tissue)
ENST00000486255.1 ENST00000486255.1_1073_1096_+ 1073–1096 5.00 18.52 0.02 100.0 GABRE-209 retained intron gastroesophageal sphincter (Tissue)
ENST00000488946.1 ENST00000488946.1_155_235_+ 155–235 2849.00 11.55 10.83 99.72 RPL13A-212 retained intron gastroesophageal sphincter (Tissue)
ENST00000488946.1 ENST00000488946.1_844_886_+ 844–886 941.00 3.82 3.58 100.0 RPL13A-212 retained intron gastroesophageal sphincter (Tissue)