ENCFF181JNF

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR866ZSG
Description: Part of ENCODE experiment ENCSR866ZSG. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000448136.6 ENST00000448136.6_1026_1098_+ 1026–1098 17.00 2.43 0.06 100.0 SNHG16-201 lncRNA gastroesophageal sphincter (Tissue)
ENST00000453082.5 ENST00000453082.5_267_347_+ 267–347 24.00 4.32 0.09 100.0 SNHG14-207 lncRNA gastroesophageal sphincter (Tissue)
ENST00000458770.1 ENST00000458770.1_7_74_+ 7–74 17586.00 84.70 66.87 95.4 SNORD105B-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000458838.1 ENST00000458838.1_8_75_+ 8–75 66.00 23.74 0.25 48.89 SNORD121B-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000458892.1 ENST00000458892.1_5_39_+ 5–39 89.00 0.39 0.34 100.0 SNORD127-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000458892.1 ENST00000458892.1_5_80_+ 5–80 22023.00 96.20 83.74 99.18 SNORD127-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000458893.1 ENST00000458893.1_3_64_+ 3–64 3611.00 93.77 13.73 100.0 SNORD42B-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000459254.1 ENST00000459254.1_69_90_+ 69–90 547.00 0.65 2.08 100.0 RNY4P25-201 misc RNA gastroesophageal sphincter (Tissue)
ENST00000459386.1 ENST00000459386.1_9_73_+ 9–73 68.00 44.44 0.26 100.0 SNORD121A-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000459475.1 ENST00000459475.1_4_75_+ 4–75 272.00 6.71 1.03 53.75 SNORD126-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 3626.00 89.46 13.79 97.39 SNORD126-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000459577.1 ENST00000459577.1_12_91_+ 12–91 5835.00 90.41 22.19 96.05 SNORD124-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000461448.6 ENST00000461448.6_522_587_+ 522–587 375.00 30.46 1.43 100.0 SNHG12-201 retained intron gastroesophageal sphincter (Tissue)
ENST00000467105.1 ENST00000467105.1_581_668_+ 581–668 635.00 5.13 2.41 18.06 RPL3-212 retained intron gastroesophageal sphincter (Tissue)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 4380.00 35.35 16.65 100.0 RPL3-212 retained intron gastroesophageal sphincter (Tissue)
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 2025.00 96.02 7.70 100.0 SMC1A-204 retained intron gastroesophageal sphincter (Tissue)
ENST00000471759.5 ENST00000471759.5_372_449_+ 372–449 21770.00 85.01 82.78 97.61 RABGGTB-208 protein coding CDS not defined gastroesophageal sphincter (Tissue)
ENST00000481456.1 ENST00000481456.1_825_898_+ 825–898 2716.00 47.98 10.33 72.21 DDX39B-219 retained intron gastroesophageal sphincter (Tissue)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 183.00 3.23 0.70 100.0 DDX39B-219 retained intron gastroesophageal sphincter (Tissue)
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 462.00 8.16 1.76 100.0 DDX39B-219 retained intron gastroesophageal sphincter (Tissue)
ENST00000484599.1 ENST00000484599.1_580_645_+ 580–645 453.00 64.16 1.72 100.0 RPS8-206 protein coding CDS not defined gastroesophageal sphincter (Tissue)
ENST00000484610.5 ENST00000484610.5_361_433_+ 361–433 348550.00 98.27 1325.29 99.46 RPL13-207 retained intron gastroesophageal sphincter (Tissue)
ENST00000484610.5 ENST00000484610.5_392_433_+ 392–433 956.00 0.27 3.64 100.0 RPL13-207 retained intron gastroesophageal sphincter (Tissue)
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 412.00 0.31 1.57 40.51 EIF4A2-219 retained intron gastroesophageal sphincter (Tissue)
ENST00000485101.5 ENST00000485101.5_348_405_+ 348–405 479.00 0.36 1.82 80.1 EIF4A2-219 retained intron gastroesophageal sphincter (Tissue)