ENCFF000JGN

Library Details

Organism: Homo Sapiens
Biosample: articular chondrocyte of knee joint (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CVB
Description: Part of ENCODE experiment ENCSR000CVB. The libraries contained in this experiment come from knee joint chondrocytes primary whole cells, HCH isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000567229.5 ENST00000567229.5_479_567_+ 479–567 1270.00 69.25 119.53 100.0 RPL4-214 retained intron articular chondrocyte of knee joint (Primary cell)
ENST00000570843.1 ENST00000570843.1_1_85_+ 1–85 6134.00 36.47 577.31 100.0 ENST00000570843 lncRNA articular chondrocyte of knee joint (Primary cell)
ENST00000570843.1 ENST00000570843.1_1_80_+ 1–80 6478.00 38.51 609.69 100.0 ENST00000570843 lncRNA articular chondrocyte of knee joint (Primary cell)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 0.95 0.02 0.09 4.76 C19orf48P-203 retained intron articular chondrocyte of knee joint (Primary cell)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 14.70 0.31 1.38 86.48 C19orf48P-203 retained intron articular chondrocyte of knee joint (Primary cell)
ENST00000595794.5 ENST00000595794.5_230_318_+ 230–318 1731.00 36.57 162.92 100.0 C19orf48P-203 retained intron articular chondrocyte of knee joint (Primary cell)
ENST00000600027.5 ENST00000600027.5_434_519_+ 434–519 149.00 19.08 14.02 100.0 RPS11-206 retained intron articular chondrocyte of knee joint (Primary cell)
ENST00000602478.2 ENST00000602478.2_671_758_+ 671–758 20.00 1.91 1.88 100.0 ENST00000602478 lncRNA articular chondrocyte of knee joint (Primary cell)
ENST00000612233.1 ENST00000612233.1_681_767_+ 681–767 930.00 55.23 87.53 100.0 NOP56-219 retained intron articular chondrocyte of knee joint (Primary cell)
ENST00000617785.1 ENST00000617785.1_93_187_+ 93–187 42.09 0.45 3.96 22.04 U2.3-201 snRNA articular chondrocyte of knee joint (Primary cell)
ENST00000617785.1 ENST00000617785.1_99_187_+ 99–187 3994.00 42.55 375.90 100.0 U2.3-201 snRNA articular chondrocyte of knee joint (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_87_+ 1–87 3.00 0.03 0.28 100.0 U2.3-201 snRNA articular chondrocyte of knee joint (Primary cell)
ENST00000617785.1 ENST00000617785.1_95_188_+ 95–188 118.55 1.26 11.16 62.07 U2.3-201 snRNA articular chondrocyte of knee joint (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_92_+ 1–92 10.09 0.11 0.95 77.63 U2.3-201 snRNA articular chondrocyte of knee joint (Primary cell)
ENST00000650796.1 ENST00000650796.1_1641_1732_+ 1641–1732 341.00 0.12 32.09 100.0 GAS5-230 retained intron articular chondrocyte of knee joint (Primary cell)
ENST00000650796.1 ENST00000650796.1_358_438_+ 358–438 181531.00 65.50 17085.16 95.9 GAS5-230 retained intron articular chondrocyte of knee joint (Primary cell)
ENST00000650796.1 ENST00000650796.1_2165_2249_+ 2165–2249 1521.00 0.55 143.15 100.0 GAS5-230 retained intron articular chondrocyte of knee joint (Primary cell)
ENST00000650796.1 ENST00000650796.1_1641_1722_+ 1641–1722 34641.00 12.50 3260.31 74.15 GAS5-230 retained intron articular chondrocyte of knee joint (Primary cell)
ENST00000651540.1 ENST00000651540.1_1_88_+ 1–88 1182.00 61.31 111.25 100.0 ENST00000651540 lncRNA articular chondrocyte of knee joint (Primary cell)
ENST00000654356.2 ENST00000654356.2_1362_1446_+ 1362–1446 26385.00 7.88 2483.28 99.14 SNHG29-232 lncRNA articular chondrocyte of knee joint (Primary cell)
ENST00000654356.2 ENST00000654356.2_1361_1440_+ 1361–1440 286010.00 85.41 26918.42 95.65 SNHG29-232 lncRNA articular chondrocyte of knee joint (Primary cell)
ENST00000654356.2 ENST00000654356.2_1361_1451_+ 1361–1451 1544.00 0.46 145.32 100.0 SNHG29-232 lncRNA articular chondrocyte of knee joint (Primary cell)
ENST00000654356.2 ENST00000654356.2_463_540_+ 463–540 961.00 0.29 90.45 100.0 SNHG29-232 lncRNA articular chondrocyte of knee joint (Primary cell)
ENST00000668048.2 ENST00000668048.2_2490_2559_+ 2490–2559 1756.00 20.93 165.27 100.0 SNHG1-248 lncRNA articular chondrocyte of knee joint (Primary cell)
ENST00000668048.2 ENST00000668048.2_517_601_+ 517–601 1203.00 14.34 113.22 100.0 SNHG1-248 lncRNA articular chondrocyte of knee joint (Primary cell)