ENCFF000JGN

Library Details

Organism: Homo Sapiens
Biosample: articular chondrocyte of knee joint (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CVB
Description: Part of ENCODE experiment ENCSR000CVB. The libraries contained in this experiment come from knee joint chondrocytes primary whole cells, HCH isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362698.1 ENST00000362698.1_29_116_+ 29–116 202.00 36.73 19.01 80.8 RNU5A-1-201 snRNA articular chondrocyte of knee joint (Primary cell)
ENST00000362698.1 ENST00000362698.1_24_116_+ 24–116 52.85 9.61 4.97 34.54 RNU5A-1-201 snRNA articular chondrocyte of knee joint (Primary cell)
ENST00000362698.1 ENST00000362698.1_22_116_+ 22–116 19.01 3.46 1.79 27.16 RNU5A-1-201 snRNA articular chondrocyte of knee joint (Primary cell)
ENST00000365328.1 ENST00000365328.1_246_331_+ 246–331 49.00 6.64 4.61 100.0 7SK.1-201 misc RNA articular chondrocyte of knee joint (Primary cell)
ENST00000365328.1 ENST00000365328.1_238_331_+ 238–331 193.00 26.15 18.16 100.0 7SK.1-201 misc RNA articular chondrocyte of knee joint (Primary cell)
ENST00000410433.1 ENST00000410433.1_1_81_+ 1–81 989.00 62.44 93.08 100.0 SNORD12B-201 snoRNA articular chondrocyte of knee joint (Primary cell)
ENST00000410433.1 ENST00000410433.1_1_85_+ 1–85 285.00 17.99 26.82 100.0 SNORD12B-201 snoRNA articular chondrocyte of knee joint (Primary cell)
ENST00000437681.1 ENST00000437681.1_1009_1099_+ 1009–1099 8272.00 92.22 778.54 100.0 SNHG3-202 retained intron articular chondrocyte of knee joint (Primary cell)
ENST00000459577.1 ENST00000459577.1_6_92_+ 6–92 1519.00 74.57 142.96 100.0 SNORD124-201 snoRNA articular chondrocyte of knee joint (Primary cell)
ENST00000467105.1 ENST00000467105.1_575_664_+ 575–664 2016.00 47.82 189.74 60.6 RPL3-212 retained intron articular chondrocyte of knee joint (Primary cell)
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 21309.00 86.51 2005.54 100.0 RPL13A-212 retained intron articular chondrocyte of knee joint (Primary cell)
ENST00000488946.1 ENST00000488946.1_1357_1443_+ 1357–1443 708.00 2.87 66.63 100.0 RPL13A-212 retained intron articular chondrocyte of knee joint (Primary cell)
ENST00000489392.1 ENST00000489392.1_110_189_+ 110–189 7502.00 65.82 706.07 100.0 RPL7A-207 protein coding CDS not defined articular chondrocyte of knee joint (Primary cell)
ENST00000489392.1 ENST00000489392.1_110_194_+ 110–194 2772.00 24.32 260.89 100.0 RPL7A-207 protein coding CDS not defined articular chondrocyte of knee joint (Primary cell)
ENST00000496055.5 ENST00000496055.5_465_553_+ 465–553 1536.00 35.83 144.56 100.0 RABGGTB-213 protein coding CDS not defined articular chondrocyte of knee joint (Primary cell)
ENST00000496055.5 ENST00000496055.5_465_549_+ 465–549 612.00 14.28 57.60 100.0 RABGGTB-213 protein coding CDS not defined articular chondrocyte of knee joint (Primary cell)
ENST00000497519.1 ENST00000497519.1_675_769_+ 675–769 186018.00 98.66 17507.47 99.34 RPL5-205 retained intron articular chondrocyte of knee joint (Primary cell)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 5.00 0.00 0.47 100.0 RPL5-205 retained intron articular chondrocyte of knee joint (Primary cell)
ENST00000513060.5 ENST00000513060.5_706_790_+ 706–790 219.00 16.53 20.61 100.0 RACK1-230 retained intron articular chondrocyte of knee joint (Primary cell)
ENST00000521127.2 ENST00000521127.2_328_407_+ 328–407 41273.00 89.78 3884.49 100.0 SNHG6-204 retained intron articular chondrocyte of knee joint (Primary cell)
ENST00000521127.2 ENST00000521127.2_328_412_+ 328–412 2354.00 5.12 221.55 100.0 SNHG6-204 retained intron articular chondrocyte of knee joint (Primary cell)
ENST00000525239.5 ENST00000525239.5_93_187_+ 93–187 12.00 2.12 1.13 54.55 WDR74-204 protein coding articular chondrocyte of knee joint (Primary cell)
ENST00000527983.5 ENST00000527983.5_1314_1406_+ 1314–1406 694.00 59.47 65.32 70.24 HSPA8-211 retained intron articular chondrocyte of knee joint (Primary cell)
ENST00000531908.5 ENST00000531908.5_147_241_+ 147–241 2362.00 77.44 222.30 100.0 RPS13-208 retained intron articular chondrocyte of knee joint (Primary cell)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 5031.00 76.87 473.50 100.0 HSPA8-215 retained intron articular chondrocyte of knee joint (Primary cell)