ENCFF106XDA

Library Details

Organism: Homo Sapiens
Biosample: esophagus muscularis mucosa (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR295NAK
Description: Part of ENCODE experiment ENCSR295NAK. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's muscle layer of esophagus tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR17-8222238 tRNA-transcript-chr17-8222238_1_33_+ 1–33 5651.00 50.24 25.29 76.83 TRNA-TRANSCRIPT-CHR17-8222238 Asp tRNA esophagus muscularis mucosa (Tissue)
TRNA-TRANSCRIPT-CHR1-7930279 tRNA-transcript-chr1-7930279_1_33_+ 1–33 14112.00 98.59 63.15 100.0 TRNA-TRANSCRIPT-CHR1-7930279 Pseudo tRNA esophagus muscularis mucosa (Tissue)
TRNA-TRANSCRIPT-CHR19-45478602 tRNA-transcript-chr19-45478602_1_37_+ 1–37 221.00 37.97 0.99 86.33 TRNA-TRANSCRIPT-CHR19-45478602 SeC(e) tRNA esophagus muscularis mucosa (Tissue)
TRNA-TRANSCRIPT-CHR20-45322361 tRNA-transcript-chr20-45322361_1_33_+ 1–33 504.00 96.37 2.26 100.0 TRNA-TRANSCRIPT-CHR20-45322361 Pseudo tRNA esophagus muscularis mucosa (Tissue)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_1_52_+ 1–52 1.00 0.00 0.00 3.12 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA esophagus muscularis mucosa (Tissue)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_3_52_+ 3–52 31.00 0.05 0.14 96.88 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA esophagus muscularis mucosa (Tissue)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_1_32_+ 1–32 40800.00 71.50 182.58 85.57 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA esophagus muscularis mucosa (Tissue)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_33_+ 1–33 23863.23 64.06 106.79 66.7 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA esophagus muscularis mucosa (Tissue)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_28_+ 1–28 168.00 0.45 0.75 87.96 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA esophagus muscularis mucosa (Tissue)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_35_+ 1–35 14079.50 37.80 63.01 40.14 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA esophagus muscularis mucosa (Tissue)
TRNA-TRANSCRIPT-CHR2-203364408 tRNA-transcript-chr2-203364408_2_32_+ 2–32 662098.00 99.01 2962.92 99.85 TRNA-TRANSCRIPT-CHR2-203364408 Pseudo tRNA esophagus muscularis mucosa (Tissue)
TRNA-TRANSCRIPT-CHR3-104160680 tRNA-transcript-chr3-104160680_12_33_+ 12–33 877.00 40.25 3.92 100.0 TRNA-TRANSCRIPT-CHR3-104160680 Pseudo tRNA esophagus muscularis mucosa (Tissue)
TRNA-TRANSCRIPT-CHR5-181188854 tRNA-transcript-chr5-181188854_1_32_+ 1–32 6298.00 42.76 28.18 60.6 TRNA-TRANSCRIPT-CHR5-181188854 Pro tRNA esophagus muscularis mucosa (Tissue)
TRNA-TRANSCRIPT-CHR5-181218270 tRNA-transcript-chr5-181218270_1_39_+ 1–39 40.00 0.00 0.18 100.0 TRNA-TRANSCRIPT-CHR5-181218270 Val tRNA esophagus muscularis mucosa (Tissue)
TRNA-TRANSCRIPT-CHR6-125780247 tRNA-transcript-chr6-125780247_1_42_+ 1–42 191.00 0.01 0.85 83.41 TRNA-TRANSCRIPT-CHR6-125780247 Glu tRNA esophagus muscularis mucosa (Tissue)
TRNA-TRANSCRIPT-CHR6-144216547 tRNA-transcript-chr6-144216547_1_50_+ 1–50 5579.00 81.95 24.97 100.0 TRNA-TRANSCRIPT-CHR6-144216547 Leu tRNA esophagus muscularis mucosa (Tissue)
TRNA-TRANSCRIPT-CHR6-26311196 tRNA-transcript-chr6-26311196_1_53_+ 1–53 45.00 1.28 0.20 100.0 TRNA-TRANSCRIPT-CHR6-26311196 Gln tRNA esophagus muscularis mucosa (Tissue)
TRNA-TRANSCRIPT-CHR6-26538054 tRNA-transcript-chr6-26538054_1_33_+ 1–33 1690712.00 99.72 7566.01 99.86 TRNA-TRANSCRIPT-CHR6-26538054 Val tRNA esophagus muscularis mucosa (Tissue)
TRNA-TRANSCRIPT-CHR6-27158127 tRNA-transcript-chr6-27158127_13_33_+ 13–33 150.00 0.49 0.67 100.0 TRNA-TRANSCRIPT-CHR6-27158127 His tRNA esophagus muscularis mucosa (Tissue)
TRNA-TRANSCRIPT-CHR6-27158127 tRNA-transcript-chr6-27158127_1_33_+ 1–33 23962.00 78.89 107.23 95.88 TRNA-TRANSCRIPT-CHR6-27158127 His tRNA esophagus muscularis mucosa (Tissue)
TRNA-TRANSCRIPT-CHR6-27206088 tRNA-transcript-chr6-27206088_1_33_+ 1–33 1009.00 87.82 4.52 100.0 TRNA-TRANSCRIPT-CHR6-27206088 Val tRNA esophagus muscularis mucosa (Tissue)
TRNA-TRANSCRIPT-CHR6-27215173 tRNA-transcript-chr6-27215173_1_19_+ 1–19 2202.00 61.85 9.85 100.0 TRNA-TRANSCRIPT-CHR6-27215173 Arg tRNA esophagus muscularis mucosa (Tissue)
TRNA-TRANSCRIPT-CHR6-27235509 tRNA-transcript-chr6-27235509_1_33_+ 1–33 1164.00 52.96 5.21 100.0 TRNA-TRANSCRIPT-CHR6-27235509 Val tRNA esophagus muscularis mucosa (Tissue)
TRNA-TRANSCRIPT-CHR6-27280270 tRNA-transcript-chr6-27280270_1_33_+ 1–33 74666.00 99.06 334.13 100.0 TRNA-TRANSCRIPT-CHR6-27280270 Val tRNA esophagus muscularis mucosa (Tissue)
TRNA-TRANSCRIPT-CHR6-27290626 tRNA-transcript-chr6-27290626_1_33_+ 1–33 11506.00 98.56 51.49 100.0 TRNA-TRANSCRIPT-CHR6-27290626 Val tRNA esophagus muscularis mucosa (Tissue)