ENCFF106XDA

Library Details

Organism: Homo Sapiens
Biosample: esophagus muscularis mucosa (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR295NAK
Description: Part of ENCODE experiment ENCSR295NAK. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's muscle layer of esophagus tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000390225.1 ENST00000390225.1_30_51_+ 30–51 278.00 88.82 1.24 100.0 MIR769-201 miRNA esophagus muscularis mucosa (Tissue)
ENST00000390689.3 ENST00000390689.3_37_51_+ 37–51 45.00 38.14 0.20 100.0 KRTAP19-1-201 protein coding esophagus muscularis mucosa (Tissue)
ENST00000390708.1 ENST00000390708.1_11_33_+ 11–33 7.00 11.86 0.03 100.0 MIR708-201 miRNA esophagus muscularis mucosa (Tissue)
ENST00000390725.1 ENST00000390725.1_44_66_+ 44–66 10.00 90.91 0.04 100.0 MIR509-3-201 miRNA esophagus muscularis mucosa (Tissue)
ENST00000390813.1 ENST00000390813.1_45_67_+ 45–67 3.00 75.00 0.01 100.0 MIR301B-201 miRNA esophagus muscularis mucosa (Tissue)
ENST00000390851.1 ENST00000390851.1_150_165_+ 150–165 68.00 20.73 0.30 81.93 RNU1-82P-201 snRNA esophagus muscularis mucosa (Tissue)
ENST00000390856.1 ENST00000390856.1_48_74_+ 48–74 2039.00 23.48 9.12 71.44 SNORD66-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000390856.1 ENST00000390856.1_25_76_+ 25–76 898.00 10.34 4.02 100.0 SNORD66-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000390856.1 ENST00000390856.1_1_59_+ 1–59 193.00 2.22 0.86 100.0 SNORD66-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000390856.1 ENST00000390856.1_1_75_+ 1–75 1849.00 21.29 8.27 100.0 SNORD66-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000390880.2 ENST00000390880.2_45_67_+ 45–67 23.00 57.50 0.10 100.0 U3.17-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000390930.1 ENST00000390930.1_207_235_+ 207–235 826.00 89.98 3.70 100.0 SNORD17-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000390994.1 ENST00000390994.1_6_74_+ 6–74 87.00 51.79 0.39 100.0 SNORD72-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000391007.1 ENST00000391007.1_9_77_+ 9–77 592.00 65.78 2.65 100.0 SNORD70B-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000391107.1 ENST00000391107.1_62_87_+ 62–87 4117.00 79.40 18.42 97.33 RNY4P18-201 misc RNA esophagus muscularis mucosa (Tissue)
ENST00000391145.1 ENST00000391145.1_18_100_+ 18–100 1087.00 6.80 4.86 57.18 SNORD90-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000391145.1 ENST00000391145.1_18_97_+ 18–97 14190.00 88.78 63.50 100.0 SNORD90-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000391150.1 ENST00000391150.1_9_69_+ 9–69 9467.00 59.51 42.37 100.0 SNORD69-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000391150.1 ENST00000391150.1_35_69_+ 35–69 3232.00 20.32 14.46 100.0 SNORD69-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000391150.1 ENST00000391150.1_9_48_+ 9–48 1825.00 11.47 8.17 100.0 SNORD69-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000391150.1 ENST00000391150.1_9_35_+ 9–35 230.00 1.45 1.03 100.0 SNORD69-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000391232.1 ENST00000391232.1_9_80_+ 9–80 820.00 49.73 3.67 59.51 SNORD70-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000393354.7 ENST00000393354.7_7988_8016_+ 7988–8016 104.00 0.86 0.47 100.0 B4GALNT2-202 protein coding esophagus muscularis mucosa (Tissue)
ENST00000393354.7 ENST00000393354.7_8003_8016_+ 8003–8016 8133.00 66.97 36.40 88.32 B4GALNT2-202 protein coding esophagus muscularis mucosa (Tissue)
ENST00000396355.5 ENST00000396355.5_35_56_+ 35–56 185.00 69.03 0.83 100.0 NDE1-202 protein coding esophagus muscularis mucosa (Tissue)