ENCFF081QYT

Library Details

Organism: Homo Sapiens
Biosample: esophagus squamous epithelium (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR289GGY
Description: Part of ENCODE experiment ENCSR289GGY. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's esophagus mucosa tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668419.1 ENST00000668419.1_3471_3561_+ 3471–3561 25627.00 29.38 46.78 100.0 SNHG14-315 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668419.1 ENST00000668419.1_1471_1561_+ 1471–1561 31372.00 35.96 57.26 91.46 SNHG14-315 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668419.1 ENST00000668419.1_2_92_+ 2–92 20991.00 24.06 38.32 85.25 SNHG14-315 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1322_+ 1278–1322 2333.00 0.36 4.26 100.0 SNHG5-273 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1351_+ 1278–1351 439660.14 67.79 802.54 75.16 SNHG5-273 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1337_+ 1278–1337 146.00 0.02 0.27 100.0 SNHG5-273 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668505.1 ENST00000668505.1_988_1033_+ 988–1033 284.00 0.04 0.52 100.0 SNHG5-273 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1353_+ 1278–1353 149792.02 23.10 273.42 24.63 SNHG5-273 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668505.1 ENST00000668505.1_988_1056_+ 988–1056 16327.00 2.52 29.80 92.01 SNHG5-273 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1315_+ 1278–1315 619.00 0.10 1.13 100.0 SNHG5-273 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668505.1 ENST00000668505.1_1279_1308_+ 1279–1308 1888.00 0.29 3.45 100.0 SNHG5-273 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1340_+ 1278–1340 58.00 0.01 0.11 100.0 SNHG5-273 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1361_+ 1278–1361 8380.00 1.29 15.30 96.97 SNHG5-273 lncRNA esophagus squamous epithelium (Tissue)
ENST00000669673.1 ENST00000669673.1_3794_3884_+ 3794–3884 539.00 15.50 0.98 34.48 SNHG14-323 lncRNA esophagus squamous epithelium (Tissue)
ENST00000670680.1 ENST00000670680.1_34_69_+ 34–69 478.00 0.35 0.87 62.16 MEG8-251 lncRNA esophagus squamous epithelium (Tissue)
ENST00000670680.1 ENST00000670680.1_2_69_+ 2–69 128375.00 94.14 234.33 98.81 MEG8-251 lncRNA esophagus squamous epithelium (Tissue)
ENST00000670680.1 ENST00000670680.1_36_69_+ 36–69 418.00 0.31 0.76 47.88 MEG8-251 lncRNA esophagus squamous epithelium (Tissue)
ENST00000670680.1 ENST00000670680.1_1539_1602_+ 1539–1602 3971.00 2.91 7.25 93.74 MEG8-251 lncRNA esophagus squamous epithelium (Tissue)
ENST00000670680.1 ENST00000670680.1_10_70_+ 10–70 2.00 0.00 0.00 100.0 MEG8-251 lncRNA esophagus squamous epithelium (Tissue)
ENST00000670697.1 ENST00000670697.1_233_310_+ 233–310 14022.00 74.24 25.60 93.93 SNHG14-336 lncRNA esophagus squamous epithelium (Tissue)
ENST00000670697.1 ENST00000670697.1_232_313_+ 232–313 4526.00 23.96 8.26 45.53 SNHG14-336 lncRNA esophagus squamous epithelium (Tissue)
ENST00000671491.1 ENST00000671491.1_1778_1868_+ 1778–1868 8117.00 86.42 14.82 95.79 SNHG14-341 lncRNA esophagus squamous epithelium (Tissue)
ENST00000676514.1 ENST00000676514.1_1978_2054_+ 1978–2054 7537.00 65.96 13.76 100.0 NCL-211 retained intron esophagus squamous epithelium (Tissue)
ENST00000679646.1 ENST00000679646.1_899_921_+ 899–921 540.00 42.15 0.99 100.0 FMN2-209 protein coding CDS not defined esophagus squamous epithelium (Tissue)
ENST00000685142.3 ENST00000685142.3_1449_1480_+ 1449–1480 6.00 0.20 0.01 100.0 LINC02739-203 lncRNA esophagus squamous epithelium (Tissue)