ENCFF081QYT

Library Details

Organism: Homo Sapiens
Biosample: esophagus squamous epithelium (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR289GGY
Description: Part of ENCODE experiment ENCSR289GGY. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's esophagus mucosa tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000578683.1 ENST00000578683.1_11_30_+ 11–30 176.00 57.89 0.32 100.0 MIR378C-201 miRNA esophagus squamous epithelium (Tissue)
ENST00000579003.2 ENST00000579003.2_1219_1238_+ 1219–1238 2076.00 66.07 3.79 80.09 MIR142HG-201 lncRNA esophagus squamous epithelium (Tissue)
ENST00000579003.2 ENST00000579003.2_1257_1279_+ 1257–1279 11.00 0.35 0.02 100.0 MIR142HG-201 lncRNA esophagus squamous epithelium (Tissue)
ENST00000579003.2 ENST00000579003.2_1221_1241_+ 1221–1241 359.00 11.43 0.66 27.05 MIR142HG-201 lncRNA esophagus squamous epithelium (Tissue)
ENST00000580755.1 ENST00000580755.1_131_197_+ 131–197 1973.67 0.19 3.60 54.46 RPL23A-208 retained intron esophagus squamous epithelium (Tissue)
ENST00000580755.1 ENST00000580755.1_131_199_+ 131–199 1613.97 0.16 2.95 55.03 RPL23A-208 retained intron esophagus squamous epithelium (Tissue)
ENST00000580755.1 ENST00000580755.1_132_190_+ 132–190 764759.00 74.46 1395.96 86.39 RPL23A-208 retained intron esophagus squamous epithelium (Tissue)
ENST00000580755.1 ENST00000580755.1_131_193_+ 131–193 252162.00 24.55 460.28 92.9 RPL23A-208 retained intron esophagus squamous epithelium (Tissue)
ENST00000581072.6 ENST00000581072.6_810_831_+ 810–831 52.00 3.46 0.09 100.0 MIR133A1HG-202 lncRNA esophagus squamous epithelium (Tissue)
ENST00000581305.1 ENST00000581305.1_509_570_+ 509–570 12969.00 6.10 23.67 60.16 RPL17-211 retained intron esophagus squamous epithelium (Tissue)
ENST00000581305.1 ENST00000581305.1_127_189_+ 127–189 29697.00 13.97 54.21 61.16 RPL17-211 retained intron esophagus squamous epithelium (Tissue)
ENST00000581305.1 ENST00000581305.1_127_196_+ 127–196 1023.00 0.48 1.87 100.0 RPL17-211 retained intron esophagus squamous epithelium (Tissue)
ENST00000581305.1 ENST00000581305.1_127_192_+ 127–192 99806.00 46.93 182.18 95.56 RPL17-211 retained intron esophagus squamous epithelium (Tissue)
ENST00000581305.1 ENST00000581305.1_509_573_+ 509–573 64970.00 30.55 118.59 96.89 RPL17-211 retained intron esophagus squamous epithelium (Tissue)
ENST00000582320.4 ENST00000582320.4_575_597_+ 575–597 45.00 36.89 0.08 44.55 ENST00000582320 lncRNA esophagus squamous epithelium (Tissue)
ENST00000582320.4 ENST00000582320.4_395_417_+ 395–417 6.00 4.92 0.01 100.0 ENST00000582320 lncRNA esophagus squamous epithelium (Tissue)
ENST00000582588.1 ENST00000582588.1_258_286_+ 258–286 2135.00 5.33 3.90 100.0 RPL17-214 retained intron esophagus squamous epithelium (Tissue)
ENST00000582588.1 ENST00000582588.1_258_318_+ 258–318 19316.65 48.21 35.26 57.7 RPL17-214 retained intron esophagus squamous epithelium (Tissue)
ENST00000582588.1 ENST00000582588.1_258_320_+ 258–320 15754.62 39.32 28.76 44.06 RPL17-214 retained intron esophagus squamous epithelium (Tissue)
ENST00000583861.1 ENST00000583861.1_1_62_+ 1–62 880761.00 99.46 1607.70 99.85 SNORD43-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000583861.1 ENST00000583861.1_12_62_+ 12–62 39.00 0.00 0.07 100.0 SNORD43-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000584249.1 ENST00000584249.1_60_79_+ 60–79 90.00 39.30 0.16 100.0 MIR151B-201 miRNA esophagus squamous epithelium (Tissue)
ENST00000584923.1 ENST00000584923.1_153_216_+ 153–216 119.00 2.21 0.22 100.0 SNORD3A-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000585078.1 ENST00000585078.1_1_83_+ 1–83 8804.00 86.96 16.07 100.0 SNORD92-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000585881.5 ENST00000585881.5_140_162_+ 140–162 2339.00 32.69 4.27 100.0 NSRP1-214 protein coding esophagus squamous epithelium (Tissue)