ENCFF081QYT

Library Details

Organism: Homo Sapiens
Biosample: esophagus squamous epithelium (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR289GGY
Description: Part of ENCODE experiment ENCSR289GGY. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's esophagus mucosa tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000561554.5 ENST00000561554.5_276_321_+ 276–321 36.00 0.03 0.07 100.0 RPL4-202 retained intron esophagus squamous epithelium (Tissue)
ENST00000561554.5 ENST00000561554.5_276_317_+ 276–317 514.00 0.50 0.94 100.0 RPL4-202 retained intron esophagus squamous epithelium (Tissue)
ENST00000563103.1 ENST00000563103.1_221_256_+ 221–256 340.00 3.79 0.62 100.0 ENST00000563103 lncRNA esophagus squamous epithelium (Tissue)
ENST00000564647.5 ENST00000564647.5_318_386_+ 318–386 10386.00 79.08 18.96 100.0 RPL4-207 retained intron esophagus squamous epithelium (Tissue)
ENST00000564647.5 ENST00000564647.5_345_386_+ 345–386 649.00 4.94 1.18 100.0 RPL4-207 retained intron esophagus squamous epithelium (Tissue)
ENST00000565336.1 ENST00000565336.1_451_487_+ 451–487 14494.00 79.35 26.46 93.89 ENST00000565336 lncRNA esophagus squamous epithelium (Tissue)
ENST00000565336.1 ENST00000565336.1_446_487_+ 446–487 1548.00 8.47 2.83 74.85 ENST00000565336 lncRNA esophagus squamous epithelium (Tissue)
ENST00000565907.1 ENST00000565907.1_307_350_+ 307–350 1631.00 0.53 2.98 100.0 RBMX-210 retained intron esophagus squamous epithelium (Tissue)
ENST00000565907.1 ENST00000565907.1_307_388_+ 307–388 411.00 0.13 0.75 100.0 RBMX-210 retained intron esophagus squamous epithelium (Tissue)
ENST00000565907.1 ENST00000565907.1_307_354_+ 307–354 1402.00 0.45 2.56 100.0 RBMX-210 retained intron esophagus squamous epithelium (Tissue)
ENST00000565907.1 ENST00000565907.1_307_381_+ 307–381 192602.00 62.34 351.57 63.7 RBMX-210 retained intron esophagus squamous epithelium (Tissue)
ENST00000567229.5 ENST00000567229.5_1097_1162_+ 1097–1162 1742.00 29.08 3.18 100.0 RPL4-214 retained intron esophagus squamous epithelium (Tissue)
ENST00000567229.5 ENST00000567229.5_485_573_+ 485–573 2706.00 45.17 4.94 100.0 RPL4-214 retained intron esophagus squamous epithelium (Tissue)
ENST00000569473.1 ENST00000569473.1_61_96_+ 61–96 1181.87 19.10 2.16 39.85 POLG-DT-202 lncRNA esophagus squamous epithelium (Tissue)
ENST00000569473.1 ENST00000569473.1_59_96_+ 59–96 2193.81 35.45 4.00 77.68 POLG-DT-202 lncRNA esophagus squamous epithelium (Tissue)
ENST00000569473.1 ENST00000569473.1_47_96_+ 47–96 80.00 1.29 0.15 100.0 POLG-DT-202 lncRNA esophagus squamous epithelium (Tissue)
ENST00000570843.1 ENST00000570843.1_7_38_+ 7–38 71.00 8.49 0.13 100.0 ENST00000570843 lncRNA esophagus squamous epithelium (Tissue)
ENST00000572453.1 ENST00000572453.1_1973_1994_+ 1973–1994 2051.00 80.46 3.74 100.0 MIR497HG-207 lncRNA esophagus squamous epithelium (Tissue)
ENST00000577164.2 ENST00000577164.2_444_465_+ 444–465 29826.00 96.85 54.44 98.25 MIR22HG-212 lncRNA esophagus squamous epithelium (Tissue)
ENST00000577887.1 ENST00000577887.1_1_51_+ 1–51 965.00 1.20 1.76 77.02 SNORD53B-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000577887.1 ENST00000577887.1_1_76_+ 1–76 75306.00 94.01 137.46 96.3 SNORD53B-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000577887.1 ENST00000577887.1_1_53_+ 1–53 288.00 0.36 0.53 22.98 SNORD53B-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000578036.5 ENST00000578036.5_3605_3616_+ 3605–3616 77.00 35.32 0.14 100.0 ENST00000578036 lncRNA esophagus squamous epithelium (Tissue)
ENST00000578181.1 ENST00000578181.1_477_541_+ 477–541 2397.00 90.86 4.38 100.0 RPL23A-207 protein coding esophagus squamous epithelium (Tissue)
ENST00000578242.1 ENST00000578242.1_11_31_+ 11–31 414.00 92.20 0.76 100.0 MIR744-201 miRNA esophagus squamous epithelium (Tissue)