ENCFF081QYT

Library Details

Organism: Homo Sapiens
Biosample: esophagus squamous epithelium (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR289GGY
Description: Part of ENCODE experiment ENCSR289GGY. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's esophagus mucosa tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000485101.5 ENST00000485101.5_343_405_+ 343–405 258877.00 73.60 472.54 99.24 EIF4A2-219 retained intron esophagus squamous epithelium (Tissue)
ENST00000485101.5 ENST00000485101.5_343_418_+ 343–418 1869.00 0.53 3.41 100.0 EIF4A2-219 retained intron esophagus squamous epithelium (Tissue)
ENST00000485101.5 ENST00000485101.5_365_408_+ 365–408 1037.00 0.29 1.89 34.12 EIF4A2-219 retained intron esophagus squamous epithelium (Tissue)
ENST00000485101.5 ENST00000485101.5_343_434_+ 343–434 94.00 0.03 0.17 100.0 EIF4A2-219 retained intron esophagus squamous epithelium (Tissue)
ENST00000485101.5 ENST00000485101.5_343_376_+ 343–376 1067.00 0.30 1.95 100.0 EIF4A2-219 retained intron esophagus squamous epithelium (Tissue)
ENST00000485101.5 ENST00000485101.5_2108_2152_+ 2108–2152 6.00 0.00 0.01 100.0 EIF4A2-219 retained intron esophagus squamous epithelium (Tissue)
ENST00000485390.5 ENST00000485390.5_230_303_+ 230–303 45051.00 98.17 82.23 100.0 RPS8-207 protein coding CDS not defined esophagus squamous epithelium (Tissue)
ENST00000485706.5 ENST00000485706.5_456_524_+ 456–524 441.00 23.95 0.80 100.0 RPL7A-206 protein coding CDS not defined esophagus squamous epithelium (Tissue)
ENST00000485706.5 ENST00000485706.5_456_485_+ 456–485 130.00 7.06 0.24 100.0 RPL7A-206 protein coding CDS not defined esophagus squamous epithelium (Tissue)
ENST00000485706.5 ENST00000485706.5_486_524_+ 486–524 586.00 31.83 1.07 100.0 RPL7A-206 protein coding CDS not defined esophagus squamous epithelium (Tissue)
ENST00000485756.1 ENST00000485756.1_122_192_+ 122–192 160477.00 24.92 292.93 99.18 RPL21-209 retained intron esophagus squamous epithelium (Tissue)
ENST00000485756.1 ENST00000485756.1_123_168_+ 123–168 5563.00 0.86 10.15 100.0 RPL21-209 retained intron esophagus squamous epithelium (Tissue)
ENST00000485756.1 ENST00000485756.1_123_189_+ 123–189 472357.00 73.35 862.22 97.02 RPL21-209 retained intron esophagus squamous epithelium (Tissue)
ENST00000485756.1 ENST00000485756.1_173_189_+ 173–189 7.00 0.00 0.01 100.0 RPL21-209 retained intron esophagus squamous epithelium (Tissue)
ENST00000485756.1 ENST00000485756.1_138_189_+ 138–189 870.00 0.14 1.59 100.0 RPL21-209 retained intron esophagus squamous epithelium (Tissue)
ENST00000486255.1 ENST00000486255.1_1073_1096_+ 1073–1096 421.00 42.92 0.77 100.0 GABRE-209 retained intron esophagus squamous epithelium (Tissue)
ENST00000488946.1 ENST00000488946.1_804_886_+ 804–886 37971.00 30.51 69.31 76.8 RPL13A-212 retained intron esophagus squamous epithelium (Tissue)
ENST00000488946.1 ENST00000488946.1_197_235_+ 197–235 70.00 0.06 0.13 100.0 RPL13A-212 retained intron esophagus squamous epithelium (Tissue)
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 6.00 0.00 0.01 100.0 RPL13A-212 retained intron esophagus squamous epithelium (Tissue)
ENST00000488946.1 ENST00000488946.1_1363_1444_+ 1363–1444 519.00 0.42 0.95 100.0 RPL13A-212 retained intron esophagus squamous epithelium (Tissue)
ENST00000488946.1 ENST00000488946.1_1095_1159_+ 1095–1159 749.00 0.60 1.37 100.0 RPL13A-212 retained intron esophagus squamous epithelium (Tissue)
ENST00000488946.1 ENST00000488946.1_1364_1441_+ 1364–1441 1082.00 0.87 1.98 75.66 RPL13A-212 retained intron esophagus squamous epithelium (Tissue)
ENST00000488946.1 ENST00000488946.1_155_235_+ 155–235 63286.00 50.85 115.52 99.54 RPL13A-212 retained intron esophagus squamous epithelium (Tissue)
ENST00000488946.1 ENST00000488946.1_844_886_+ 844–886 634.00 0.51 1.16 100.0 RPL13A-212 retained intron esophagus squamous epithelium (Tissue)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 320.00 3.16 0.58 100.0 RPL7A-207 protein coding CDS not defined esophagus squamous epithelium (Tissue)