ENCFF081QYT

Library Details

Organism: Homo Sapiens
Biosample: esophagus squamous epithelium (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR289GGY
Description: Part of ENCODE experiment ENCSR289GGY. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's esophagus mucosa tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000459254.1 ENST00000459254.1_69_90_+ 69–90 257.00 1.98 0.47 100.0 RNY4P25-201 misc RNA esophagus squamous epithelium (Tissue)
ENST00000459386.1 ENST00000459386.1_9_73_+ 9–73 1087.00 74.81 1.98 100.0 SNORD121A-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 9518.00 86.66 17.37 96.68 SNORD126-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000459475.1 ENST00000459475.1_4_75_+ 4–75 1188.00 10.82 2.17 59.05 SNORD126-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000459577.1 ENST00000459577.1_12_91_+ 12–91 17248.00 95.94 31.48 98.16 SNORD124-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000461448.6 ENST00000461448.6_522_587_+ 522–587 137.00 9.79 0.25 100.0 SNHG12-201 retained intron esophagus squamous epithelium (Tissue)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 4560.00 44.81 8.32 100.0 RPL3-212 retained intron esophagus squamous epithelium (Tissue)
ENST00000467105.1 ENST00000467105.1_581_668_+ 581–668 2671.00 26.25 4.88 63.05 RPL3-212 retained intron esophagus squamous epithelium (Tissue)
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 5330.00 97.23 9.73 100.0 SMC1A-204 retained intron esophagus squamous epithelium (Tissue)
ENST00000471759.5 ENST00000471759.5_372_449_+ 372–449 80476.00 94.34 146.90 98.72 RABGGTB-208 protein coding CDS not defined esophagus squamous epithelium (Tissue)
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 1131.00 7.61 2.06 100.0 DDX39B-219 retained intron esophagus squamous epithelium (Tissue)
ENST00000481456.1 ENST00000481456.1_825_898_+ 825–898 9529.00 64.09 17.39 83.84 DDX39B-219 retained intron esophagus squamous epithelium (Tissue)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 321.00 2.16 0.59 100.0 DDX39B-219 retained intron esophagus squamous epithelium (Tissue)
ENST00000484599.1 ENST00000484599.1_580_645_+ 580–645 2903.00 80.53 5.30 100.0 RPS8-206 protein coding CDS not defined esophagus squamous epithelium (Tissue)
ENST00000484610.5 ENST00000484610.5_361_433_+ 361–433 2033824.00 98.78 3712.45 99.73 RPL13-207 retained intron esophagus squamous epithelium (Tissue)
ENST00000484610.5 ENST00000484610.5_392_433_+ 392–433 5395.00 0.26 9.85 100.0 RPL13-207 retained intron esophagus squamous epithelium (Tissue)
ENST00000485101.5 ENST00000485101.5_343_405_+ 343–405 258877.00 73.60 472.54 99.24 EIF4A2-219 retained intron esophagus squamous epithelium (Tissue)
ENST00000485101.5 ENST00000485101.5_343_418_+ 343–418 1869.00 0.53 3.41 100.0 EIF4A2-219 retained intron esophagus squamous epithelium (Tissue)
ENST00000485101.5 ENST00000485101.5_365_408_+ 365–408 1037.00 0.29 1.89 34.12 EIF4A2-219 retained intron esophagus squamous epithelium (Tissue)
ENST00000485101.5 ENST00000485101.5_343_434_+ 343–434 94.00 0.03 0.17 100.0 EIF4A2-219 retained intron esophagus squamous epithelium (Tissue)
ENST00000485101.5 ENST00000485101.5_2108_2152_+ 2108–2152 6.00 0.00 0.01 100.0 EIF4A2-219 retained intron esophagus squamous epithelium (Tissue)
ENST00000485101.5 ENST00000485101.5_365_405_+ 365–405 10517.00 2.99 19.20 72.09 EIF4A2-219 retained intron esophagus squamous epithelium (Tissue)
ENST00000485101.5 ENST00000485101.5_343_400_+ 343–400 496.00 0.14 0.91 58.98 EIF4A2-219 retained intron esophagus squamous epithelium (Tissue)
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 1059.00 0.30 1.93 49.21 EIF4A2-219 retained intron esophagus squamous epithelium (Tissue)
ENST00000485101.5 ENST00000485101.5_348_405_+ 348–405 180.00 0.05 0.33 39.91 EIF4A2-219 retained intron esophagus squamous epithelium (Tissue)