ENCFF081QYT

Library Details

Organism: Homo Sapiens
Biosample: esophagus squamous epithelium (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR289GGY
Description: Part of ENCODE experiment ENCSR289GGY. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's esophagus mucosa tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000411292.1 ENST00000411292.1_51_79_+ 51–79 212.00 0.07 0.39 100.0 SNORD71-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000411292.1 ENST00000411292.1_7_79_+ 7–79 307162.00 98.25 560.68 99.72 SNORD71-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000413053.2 ENST00000413053.2_1984_2004_+ 1984–2004 1941.00 76.93 3.54 91.64 MIR194-2HG-201 lncRNA esophagus squamous epithelium (Tissue)
ENST00000413053.2 ENST00000413053.2_1985_2007_+ 1985–2007 534.00 21.17 0.97 64.26 MIR194-2HG-201 lncRNA esophagus squamous epithelium (Tissue)
ENST00000415386.2 ENST00000415386.2_302_374_+ 302–374 245.00 13.04 0.45 100.0 LINC01783-201 lncRNA esophagus squamous epithelium (Tissue)
ENST00000415804.2 ENST00000415804.2_467_487_+ 467–487 78.00 100.00 0.14 100.0 RPS7P15-201 processed pseudogene esophagus squamous epithelium (Tissue)
ENST00000426867.1 ENST00000426867.1_1_35_+ 1–35 1169.00 34.85 2.13 94.27 SNORD62B-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000426867.1 ENST00000426867.1_1_86_+ 1–86 532.00 15.86 0.97 100.0 SNORD62B-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000426867.1 ENST00000426867.1_26_86_+ 26–86 377.00 11.24 0.69 100.0 SNORD62B-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000426867.1 ENST00000426867.1_72_86_+ 72–86 3.00 0.09 0.01 100.0 SNORD62B-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000426867.1 ENST00000426867.1_58_86_+ 58–86 160.00 4.77 0.29 100.0 SNORD62B-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000432845.1 ENST00000432845.1_2382_2409_+ 2382–2409 49.00 87.50 0.09 100.0 MRPL32-203 nonsense mediated decay esophagus squamous epithelium (Tissue)
ENST00000436739.2 ENST00000436739.2_403_416_+ 403–416 10.00 47.62 0.02 100.0 ENST00000436739 lncRNA esophagus squamous epithelium (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1238_+ 1182–1238 3.00 0.10 0.01 27.27 TMEM107-204 protein coding esophagus squamous epithelium (Tissue)
ENST00000437139.7 ENST00000437139.7_1209_1267_+ 1209–1267 1162.00 37.59 2.12 87.3 TMEM107-204 protein coding esophagus squamous epithelium (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1225_+ 1182–1225 87.00 2.81 0.16 100.0 TMEM107-204 protein coding esophagus squamous epithelium (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1267_+ 1182–1267 478.00 15.46 0.87 100.0 TMEM107-204 protein coding esophagus squamous epithelium (Tissue)
ENST00000448136.6 ENST00000448136.6_1026_1098_+ 1026–1098 653.00 7.79 1.19 100.0 SNHG16-201 lncRNA esophagus squamous epithelium (Tissue)
ENST00000448136.6 ENST00000448136.6_1027_1095_+ 1027–1095 6956.00 83.00 12.70 96.49 SNHG16-201 lncRNA esophagus squamous epithelium (Tissue)
ENST00000453082.5 ENST00000453082.5_267_347_+ 267–347 38.00 22.75 0.07 100.0 SNHG14-207 lncRNA esophagus squamous epithelium (Tissue)
ENST00000458770.1 ENST00000458770.1_7_74_+ 7–74 83273.00 89.21 152.00 96.63 SNORD105B-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000458838.1 ENST00000458838.1_8_75_+ 8–75 727.00 34.85 1.33 44.44 SNORD121B-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000458892.1 ENST00000458892.1_5_39_+ 5–39 8.00 0.01 0.01 100.0 SNORD127-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000458892.1 ENST00000458892.1_5_80_+ 5–80 149532.00 98.13 272.95 99.36 SNORD127-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000458893.1 ENST00000458893.1_3_64_+ 3–64 37927.00 97.11 69.23 100.0 SNORD42B-201 snoRNA esophagus squamous epithelium (Tissue)