ENCFF081QYT

Library Details

Organism: Homo Sapiens
Biosample: esophagus squamous epithelium (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR289GGY
Description: Part of ENCODE experiment ENCSR289GGY. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's esophagus mucosa tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000390180.1 ENST00000390180.1_64_86_+ 64–86 128.00 79.01 0.23 100.0 MIR454-201 miRNA esophagus squamous epithelium (Tissue)
ENST00000390204.1 ENST00000390204.1_51_72_+ 51–72 422.00 76.04 0.77 100.0 MIR501-201 miRNA esophagus squamous epithelium (Tissue)
ENST00000390225.1 ENST00000390225.1_30_51_+ 30–51 793.00 90.63 1.45 100.0 MIR769-201 miRNA esophagus squamous epithelium (Tissue)
ENST00000390689.3 ENST00000390689.3_37_51_+ 37–51 198.00 79.84 0.36 100.0 KRTAP19-1-201 protein coding esophagus squamous epithelium (Tissue)
ENST00000390708.1 ENST00000390708.1_11_33_+ 11–33 53.00 27.75 0.10 100.0 MIR708-201 miRNA esophagus squamous epithelium (Tissue)
ENST00000390751.3 ENST00000390751.3_47_68_+ 47–68 3.00 60.00 0.01 100.0 MIR543-201 miRNA esophagus squamous epithelium (Tissue)
ENST00000390813.1 ENST00000390813.1_45_67_+ 45–67 7.00 100.00 0.01 100.0 MIR301B-201 miRNA esophagus squamous epithelium (Tissue)
ENST00000390851.1 ENST00000390851.1_150_165_+ 150–165 133.00 33.84 0.24 74.3 RNU1-82P-201 snRNA esophagus squamous epithelium (Tissue)
ENST00000390856.1 ENST00000390856.1_25_76_+ 25–76 887.00 6.60 1.62 100.0 SNORD66-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000390856.1 ENST00000390856.1_1_59_+ 1–59 351.00 2.61 0.64 100.0 SNORD66-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000390856.1 ENST00000390856.1_48_74_+ 48–74 5303.00 39.46 9.68 84.92 SNORD66-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000390856.1 ENST00000390856.1_1_75_+ 1–75 2181.00 16.23 3.98 100.0 SNORD66-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000390880.2 ENST00000390880.2_45_67_+ 45–67 39.00 65.00 0.07 100.0 U3.17-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000390930.1 ENST00000390930.1_207_235_+ 207–235 2395.00 90.69 4.37 100.0 SNORD17-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000390994.1 ENST00000390994.1_6_74_+ 6–74 812.00 66.12 1.48 100.0 SNORD72-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000391007.1 ENST00000391007.1_9_77_+ 9–77 3461.00 67.41 6.32 100.0 SNORD70B-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000391107.1 ENST00000391107.1_62_87_+ 62–87 10551.00 82.75 19.26 93.6 RNY4P18-201 misc RNA esophagus squamous epithelium (Tissue)
ENST00000391145.1 ENST00000391145.1_18_97_+ 18–97 29987.00 88.40 54.74 100.0 SNORD90-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000391145.1 ENST00000391145.1_18_100_+ 18–100 2816.00 8.30 5.14 66.45 SNORD90-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000391150.1 ENST00000391150.1_9_69_+ 9–69 47325.00 86.67 86.38 100.0 SNORD69-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000391150.1 ENST00000391150.1_35_69_+ 35–69 3156.00 5.78 5.76 100.0 SNORD69-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000391150.1 ENST00000391150.1_9_48_+ 9–48 1730.00 3.17 3.16 100.0 SNORD69-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000391150.1 ENST00000391150.1_9_35_+ 9–35 517.00 0.95 0.94 100.0 SNORD69-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000391232.1 ENST00000391232.1_9_80_+ 9–80 3815.00 50.34 6.96 55.52 SNORD70-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000393354.7 ENST00000393354.7_8003_8016_+ 8003–8016 7964.00 71.53 14.54 83.53 B4GALNT2-202 protein coding esophagus squamous epithelium (Tissue)